Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20450 and BPHYT_RS20455 are separated by 108 nucleotides BPHYT_RS20455 and BPHYT_RS20460 are separated by 227 nucleotides
BPHYT_RS20450: BPHYT_RS20450 - 6-chlorohydroxyquinol-1,2-dioxygenase, at 150,684 to 151,547
_RS20450
BPHYT_RS20455: BPHYT_RS20455 - hypothetical protein, at 151,656 to 152,333
_RS20455
BPHYT_RS20460: BPHYT_RS20460 - NmrA family transcriptional regulator, at 152,561 to 153,442
_RS20460
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.874 kb on + strand, within BPHYT_RS20450 at 150.944 kb on + strand, within BPHYT_RS20450 at 151.078 kb on + strand, within BPHYT_RS20450 at 151.079 kb on - strand, within BPHYT_RS20450 at 151.079 kb on - strand, within BPHYT_RS20450 at 151.664 kb on + strand at 151.878 kb on - strand, within BPHYT_RS20455 at 152.018 kb on - strand, within BPHYT_RS20455 at 152.018 kb on - strand, within BPHYT_RS20455 at 152.058 kb on - strand, within BPHYT_RS20455 at 152.142 kb on - strand, within BPHYT_RS20455 at 152.153 kb on + strand, within BPHYT_RS20455 at 152.167 kb on + strand, within BPHYT_RS20455 at 152.423 kb on + strand at 152.475 kb on + strand at 152.517 kb on - strand at 152.554 kb on + strand at 152.757 kb on - strand, within BPHYT_RS20460 at 152.757 kb on - strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.860 kb on - strand, within BPHYT_RS20460 at 152.975 kb on - strand, within BPHYT_RS20460 at 152.980 kb on - strand, within BPHYT_RS20460 at 153.033 kb on + strand, within BPHYT_RS20460 at 153.034 kb on - strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 150,874 + BPHYT_RS20450 0.22 +0.9 150,944 + BPHYT_RS20450 0.30 +0.1 151,078 + BPHYT_RS20450 0.46 +1.7 151,079 - BPHYT_RS20450 0.46 -0.4 151,079 - BPHYT_RS20450 0.46 +0.1 151,664 + +0.9 151,878 - BPHYT_RS20455 0.33 +0.6 152,018 - BPHYT_RS20455 0.53 -0.5 152,018 - BPHYT_RS20455 0.53 +0.4 152,058 - BPHYT_RS20455 0.59 +1.8 152,142 - BPHYT_RS20455 0.72 -0.0 152,153 + BPHYT_RS20455 0.73 +0.0 152,167 + BPHYT_RS20455 0.75 -0.1 152,423 + +1.5 152,475 + +0.5 152,517 - -0.0 152,554 + -1.3 152,757 - BPHYT_RS20460 0.22 -0.0 152,757 - BPHYT_RS20460 0.22 +0.2 152,859 + BPHYT_RS20460 0.34 +1.1 152,859 + BPHYT_RS20460 0.34 -0.3 152,859 + BPHYT_RS20460 0.34 +0.7 152,860 - BPHYT_RS20460 0.34 +0.4 152,975 - BPHYT_RS20460 0.47 -0.3 152,980 - BPHYT_RS20460 0.48 -2.1 153,033 + BPHYT_RS20460 0.54 -1.1 153,034 - BPHYT_RS20460 0.54 -0.3 153,150 + BPHYT_RS20460 0.67 +0.2 153,150 + BPHYT_RS20460 0.67 -2.5
Or see this region's nucleotide sequence