Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20425

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
145,142	+		BPHYT_RS20420	0.67	-0.7
145,250	+		BPHYT_RS20420	0.74	+0.1
145,470	-		BPHYT_RS20420	0.88	+0.2
145,520	+				+0.7
145,521	-				-0.7
145,541	+				+1.4
145,541	+				+0.8
145,541	+				-0.3
145,542	-				-0.3
145,544	+				+3.6
145,798	+				+0.2
145,876	+				+1.1
145,899	+				+1.3
145,904	-				+2.3
146,124	+		BPHYT_RS20425	0.15	-2.3
146,304	-		BPHYT_RS20425	0.73	-0.9
146,307	-		BPHYT_RS20425	0.74	-1.6
146,466	+				+0.9
146,466	+				+2.1
146,467	-				-1.0
146,467	-				-0.3
146,509	-				-1.2
146,596	+				+0.1
146,596	+				+1.1
146,597	-				-0.4
146,792	-		BPHYT_RS20430	0.34	+0.3
146,792	-		BPHYT_RS20430	0.34	-0.7
147,074	+				+0.1
147,075	-				+2.3
147,075	-				-1.7
147,078	+				+0.4
147,079	-				-0.3
147,079	-				+0.3
147,079	-				+0.7
147,079	-				+0.3
147,080	+				+0.0
147,080	+				-0.7
147,153	+				-0.0
147,156	+				+0.8
147,190	+				-0.6