Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20055 and BPHYT_RS20060 are separated by 227 nucleotides BPHYT_RS20060 and BPHYT_RS20065 overlap by 1 nucleotides BPHYT_RS20065 and BPHYT_RS20070 are separated by 81 nucleotides
BPHYT_RS20055: BPHYT_RS20055 - hypothetical protein, at 43,885 to 44,202
_RS20055
BPHYT_RS20060: BPHYT_RS20060 - hypothetical protein, at 44,430 to 45,122
_RS20060
BPHYT_RS20065: BPHYT_RS20065 - hypothetical protein, at 45,122 to 45,604
_RS20065
BPHYT_RS20070: BPHYT_RS20070 - hypothetical protein, at 45,686 to 47,119
_RS20070
Position (kb) 45
46 Strain fitness (log2 ratio) -1
0
1 at 44.236 kb on + strand at 44.360 kb on - strand at 44.639 kb on - strand, within BPHYT_RS20060 at 45.145 kb on + strand at 45.418 kb on - strand, within BPHYT_RS20065 at 45.630 kb on + strand at 45.631 kb on - strand at 45.646 kb on - strand at 45.661 kb on - strand at 46.098 kb on - strand, within BPHYT_RS20070
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 44,236 + -0.0 44,360 - -1.7 44,639 - BPHYT_RS20060 0.30 +0.6 45,145 + +0.5 45,418 - BPHYT_RS20065 0.61 +1.1 45,630 + -1.0 45,631 - +0.2 45,646 - -0.9 45,661 - -1.0 46,098 - BPHYT_RS20070 0.29 -1.6
Or see this region's nucleotide sequence