Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20055

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
43,219	+				-2.4
43,242	-				-0.2
43,312	-				+0.0
43,776	+				+1.7
43,843	-				+1.9
43,886	+				-1.7
44,069	+		BPHYT_RS20055	0.58	+0.8
44,069	+		BPHYT_RS20055	0.58	-0.6
44,236	+				-0.0
44,360	-				-1.7
44,639	-		BPHYT_RS20060	0.30	+0.6
45,145	+				+0.5