Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19755

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,443,152	+				-1.8
4,443,211	-				+0.0
4,443,215	+				-0.3
4,443,216	-				+0.8
4,443,220	+				-1.2
4,443,220	+				-0.2
4,443,220	+				+0.2
4,443,220	+				+0.8
4,443,334	-				-0.0
4,443,617	-				+0.8
4,444,043	+				+0.7
4,444,043	+				+1.5
4,444,044	-				-0.7
4,444,044	-				-0.8
4,444,044	-				-0.2
4,444,511	+				-0.3
4,444,589	-				+2.2
4,444,976	-		BPHYT_RS19760	0.41	+0.7
4,444,976	-		BPHYT_RS19760	0.41	-0.2
4,445,100	-		BPHYT_RS19760	0.54	+1.9
4,445,335	+		BPHYT_RS19760	0.79	+0.6