Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19710

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,433,512	-		BPHYT_RS19705	0.27	-1.4
4,433,575	+		BPHYT_RS19705	0.33	-0.8
4,433,575	+		BPHYT_RS19705	0.33	+0.8
4,433,576	-		BPHYT_RS19705	0.34	+0.5
4,433,576	-		BPHYT_RS19705	0.34	+0.6
4,433,596	+		BPHYT_RS19705	0.36	+1.6
4,433,743	+		BPHYT_RS19705	0.51	+1.9
4,433,794	+		BPHYT_RS19705	0.56	+0.5
4,433,794	+		BPHYT_RS19705	0.56	+0.6
4,433,794	+		BPHYT_RS19705	0.56	+0.7
4,433,795	-		BPHYT_RS19705	0.56	-0.9
4,433,795	-		BPHYT_RS19705	0.56	-1.1
4,433,795	-		BPHYT_RS19705	0.56	+1.2
4,433,795	-		BPHYT_RS19705	0.56	-1.2
4,433,795	-		BPHYT_RS19705	0.56	-0.4
4,433,795	-				-1.1
4,434,036	+		BPHYT_RS19705	0.81	+1.0
4,434,167	-				+0.2
4,434,213	-				-0.7
4,434,213	-				+2.1
4,434,217	-				-1.5
4,434,217	-				+0.2
4,434,217	-				-0.7
4,434,366	+				-1.3
4,434,366	+				-0.1
4,434,367	-				+1.1
4,434,394	+				-0.2
4,434,394	+				-0.3
4,434,394	+				+0.6
4,434,395	-				+0.4
4,434,395	-				-0.2
4,434,409	-				-0.1
4,434,462	+				-0.7
4,434,462	+				-2.7
4,434,463	-				-0.4
4,434,463	-				+0.0
4,434,543	+				+0.9
4,434,543	+				-0.2
4,434,544	-				+0.3
4,434,573	-		BPHYT_RS19710	0.11	+1.6
4,435,446	+		BPHYT_RS19710	0.71	-0.1
4,435,446	+		BPHYT_RS19710	0.71	+6.1
4,435,545	-		BPHYT_RS19710	0.78	-0.6
4,435,656	+		BPHYT_RS19710	0.86	-0.8
4,435,988	+				+0.5
4,435,988	+				-0.7
4,435,988	+				+0.3
4,435,988	+				-0.3
4,435,989	-				+2.0
4,435,989	-				+0.1
4,435,989	-				-1.1
4,435,989	-				+0.1
4,435,989	-				+0.9
4,436,322	+		BPHYT_RS19715	0.33	+0.2
4,436,741	+		BPHYT_RS19715	0.75	+0.1
4,436,742	-		BPHYT_RS19715	0.75	-0.1
4,436,742	-		BPHYT_RS19715	0.75	+0.2
4,436,829	+		BPHYT_RS19715	0.84	-0.4