Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19640

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,418,423	+		BPHYT_RS19635	0.34	-1.0
4,418,423	+		BPHYT_RS19635	0.34	-0.9
4,418,437	-		BPHYT_RS19635	0.35	+1.2
4,418,497	-		BPHYT_RS19635	0.40	-0.7
4,418,497	-		BPHYT_RS19635	0.40	-1.5
4,418,523	-		BPHYT_RS19635	0.42	-3.1
4,418,527	-		BPHYT_RS19635	0.42	-1.8
4,418,631	-		BPHYT_RS19635	0.50	-2.1
4,418,631	-		BPHYT_RS19635	0.50	+0.6
4,419,081	+		BPHYT_RS19635	0.85	-1.1
4,419,081	+		BPHYT_RS19635	0.85	+0.3
4,419,082	-		BPHYT_RS19635	0.85	-2.2
4,419,155	+				-2.6
4,419,155	+				-1.5
4,419,156	-				+0.7
4,419,241	+				-0.8
4,419,242	-				-1.4
4,419,270	+				+2.0
4,419,270	+				-0.7
4,419,270	+				-1.3
4,419,270	+				-0.4
4,419,270	+				+0.7
4,419,271	-				-2.3
4,419,271	-				-2.2
4,419,271	-				-3.0
4,419,271	-				+1.1
4,419,323	-				-0.3
4,419,323	-				-1.5
4,419,323	-				+2.1
4,419,668	+		BPHYT_RS19640	0.26	-0.5
4,419,669	-		BPHYT_RS19640	0.26	-1.5
4,419,669	-		BPHYT_RS19640	0.26	-1.7
4,419,669	-		BPHYT_RS19640	0.26	-3.7
4,420,091	-		BPHYT_RS19640	0.55	-0.9
4,420,091	-		BPHYT_RS19640	0.55	-0.4
4,420,161	+		BPHYT_RS19640	0.60	-1.4
4,420,418	+		BPHYT_RS19640	0.78	-0.8
4,420,418	+		BPHYT_RS19640	0.78	-2.6
4,420,419	-		BPHYT_RS19640	0.78	-0.7
4,420,419	-		BPHYT_RS19640	0.78	-2.1
4,420,591	-				-0.3
4,421,271	+				-1.3
4,421,271	+				-0.0
4,421,272	-				-2.3
4,421,272	-				-2.3
4,421,624	+		BPHYT_RS19650	0.46	-1.6
4,421,624	+		BPHYT_RS19650	0.46	-1.0