Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19120 and BPHYT_RS19125 overlap by 4 nucleotides BPHYT_RS19125 and BPHYT_RS19130 overlap by 1 nucleotides BPHYT_RS19130 and BPHYT_RS19135 are separated by 1 nucleotides
BPHYT_RS19120: BPHYT_RS19120 - 3-oxoacyl-ACP synthase, at 4,290,464 to 4,291,528
_RS19120
BPHYT_RS19125: BPHYT_RS19125 - short-chain dehydrogenase, at 4,291,525 to 4,292,289
_RS19125
BPHYT_RS19130: BPHYT_RS19130 - acetyltransferase, at 4,292,289 to 4,292,921
_RS19130
BPHYT_RS19135: BPHYT_RS19135 - Rieske (2Fe-2S) protein, at 4,292,923 to 4,293,912
_RS19135
Position (kb) 4291
4292
4293 Strain fitness (log2 ratio) -2
-1
0
1 at 4291.106 kb on + strand, within BPHYT_RS19120 at 4291.254 kb on - strand, within BPHYT_RS19120 at 4291.355 kb on + strand, within BPHYT_RS19120 at 4291.363 kb on + strand, within BPHYT_RS19120 at 4291.363 kb on + strand, within BPHYT_RS19120 at 4291.786 kb on - strand, within BPHYT_RS19125 at 4291.893 kb on + strand, within BPHYT_RS19125 at 4291.894 kb on - strand, within BPHYT_RS19125 at 4291.996 kb on + strand, within BPHYT_RS19125 at 4292.276 kb on - strand at 4292.433 kb on + strand, within BPHYT_RS19130 at 4292.467 kb on - strand, within BPHYT_RS19130 at 4292.727 kb on + strand, within BPHYT_RS19130 at 4292.727 kb on + strand, within BPHYT_RS19130 at 4292.727 kb on + strand, within BPHYT_RS19130 at 4292.896 kb on - strand at 4293.075 kb on + strand, within BPHYT_RS19135 at 4293.076 kb on - strand, within BPHYT_RS19135 at 4293.076 kb on - strand, within BPHYT_RS19135 at 4293.105 kb on + strand, within BPHYT_RS19135 at 4293.158 kb on - strand, within BPHYT_RS19135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 4,291,106 + BPHYT_RS19120 0.60 -0.3 4,291,254 - BPHYT_RS19120 0.74 +1.2 4,291,355 + BPHYT_RS19120 0.84 -2.3 4,291,363 + BPHYT_RS19120 0.84 -0.6 4,291,363 + BPHYT_RS19120 0.84 -0.1 4,291,786 - BPHYT_RS19125 0.34 -1.3 4,291,893 + BPHYT_RS19125 0.48 -1.2 4,291,894 - BPHYT_RS19125 0.48 -0.7 4,291,996 + BPHYT_RS19125 0.62 -0.8 4,292,276 - -2.2 4,292,433 + BPHYT_RS19130 0.23 -1.4 4,292,467 - BPHYT_RS19130 0.28 -0.6 4,292,727 + BPHYT_RS19130 0.69 -1.6 4,292,727 + BPHYT_RS19130 0.69 -1.8 4,292,727 + BPHYT_RS19130 0.69 +0.0 4,292,896 - -1.2 4,293,075 + BPHYT_RS19135 0.15 +0.9 4,293,076 - BPHYT_RS19135 0.15 +0.5 4,293,076 - BPHYT_RS19135 0.15 -0.5 4,293,105 + BPHYT_RS19135 0.18 -0.4 4,293,158 - BPHYT_RS19135 0.24 +0.2
Or see this region's nucleotide sequence