Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19085 and BPHYT_RS19090 are separated by 157 nucleotides BPHYT_RS19090 and BPHYT_RS19095 are separated by 3 nucleotides BPHYT_RS19095 and BPHYT_RS19100 are separated by 263 nucleotides
BPHYT_RS19085: BPHYT_RS19085 - flagellin, at 4,282,243 to 4,283,388
_RS19085
BPHYT_RS19090: BPHYT_RS19090 - flagellar hook protein FliD, at 4,283,546 to 4,285,063
_RS19090
BPHYT_RS19095: BPHYT_RS19095 - hypothetical protein, at 4,285,067 to 4,285,381
_RS19095
BPHYT_RS19100: BPHYT_RS19100 - hypothetical protein, at 4,285,645 to 4,288,017
_RS19100
Position (kb) 4283
4284
4285
4286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4282.633 kb on + strand, within BPHYT_RS19085 at 4282.819 kb on + strand, within BPHYT_RS19085 at 4282.819 kb on + strand, within BPHYT_RS19085 at 4282.842 kb on + strand, within BPHYT_RS19085 at 4282.879 kb on + strand, within BPHYT_RS19085 at 4282.880 kb on - strand, within BPHYT_RS19085 at 4283.160 kb on + strand, within BPHYT_RS19085 at 4283.160 kb on + strand, within BPHYT_RS19085 at 4283.160 kb on + strand, within BPHYT_RS19085 at 4283.161 kb on - strand, within BPHYT_RS19085 at 4283.161 kb on - strand, within BPHYT_RS19085 at 4283.488 kb on + strand at 4283.517 kb on - strand at 4283.894 kb on + strand, within BPHYT_RS19090 at 4284.262 kb on + strand at 4284.262 kb on + strand, within BPHYT_RS19090 at 4284.263 kb on - strand, within BPHYT_RS19090 at 4284.263 kb on - strand, within BPHYT_RS19090 at 4284.272 kb on - strand, within BPHYT_RS19090 at 4284.320 kb on + strand, within BPHYT_RS19090 at 4284.917 kb on + strand at 4284.918 kb on - strand at 4284.942 kb on - strand at 4285.061 kb on + strand at 4285.061 kb on + strand at 4285.061 kb on + strand at 4285.062 kb on - strand at 4285.358 kb on + strand at 4285.453 kb on + strand at 4285.453 kb on + strand at 4285.460 kb on + strand at 4285.461 kb on - strand at 4285.623 kb on + strand at 4285.623 kb on + strand at 4285.623 kb on + strand at 4285.624 kb on - strand at 4285.657 kb on + strand at 4285.825 kb on + strand at 4285.826 kb on - strand at 4285.826 kb on - strand at 4285.933 kb on + strand, within BPHYT_RS19100 at 4285.933 kb on + strand, within BPHYT_RS19100 at 4285.934 kb on - strand, within BPHYT_RS19100 at 4285.934 kb on - strand, within BPHYT_RS19100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 4,282,633 + BPHYT_RS19085 0.34 +0.6 4,282,819 + BPHYT_RS19085 0.50 +0.6 4,282,819 + BPHYT_RS19085 0.50 -0.7 4,282,842 + BPHYT_RS19085 0.52 -0.3 4,282,879 + BPHYT_RS19085 0.55 +1.5 4,282,880 - BPHYT_RS19085 0.56 -0.5 4,283,160 + BPHYT_RS19085 0.80 +0.2 4,283,160 + BPHYT_RS19085 0.80 +0.3 4,283,160 + BPHYT_RS19085 0.80 +1.6 4,283,161 - BPHYT_RS19085 0.80 -1.8 4,283,161 - BPHYT_RS19085 0.80 -1.5 4,283,488 + +1.2 4,283,517 - +1.5 4,283,894 + BPHYT_RS19090 0.23 -2.4 4,284,262 + +1.2 4,284,262 + BPHYT_RS19090 0.47 -1.5 4,284,263 - BPHYT_RS19090 0.47 -0.0 4,284,263 - BPHYT_RS19090 0.47 -0.1 4,284,272 - BPHYT_RS19090 0.48 +0.5 4,284,320 + BPHYT_RS19090 0.51 +0.2 4,284,917 + -0.4 4,284,918 - +0.2 4,284,942 - -1.0 4,285,061 + +0.8 4,285,061 + -0.2 4,285,061 + +0.2 4,285,062 - +0.2 4,285,358 + +0.6 4,285,453 + +0.5 4,285,453 + +2.0 4,285,460 + -0.1 4,285,461 - +0.2 4,285,623 + -1.8 4,285,623 + +0.4 4,285,623 + -0.6 4,285,624 - -1.6 4,285,657 + -0.2 4,285,825 + -1.3 4,285,826 - -0.7 4,285,826 - -0.6 4,285,933 + BPHYT_RS19100 0.12 -1.9 4,285,933 + BPHYT_RS19100 0.12 -2.0 4,285,934 - BPHYT_RS19100 0.12 +0.3 4,285,934 - BPHYT_RS19100 0.12 +0.3
Or see this region's nucleotide sequence