Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19070

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,278,859	+				-0.9
4,278,860	-				+0.4
4,278,860	-				-1.7
4,278,860	-				-0.1
4,279,066	-		BPHYT_RS19065	0.42	-0.4
4,279,160	+		BPHYT_RS19065	0.58	+0.2
4,279,160	+		BPHYT_RS19065	0.58	-0.0
4,279,160	+		BPHYT_RS19065	0.58	-0.0
4,279,161	-		BPHYT_RS19065	0.58	+0.6
4,279,161	-		BPHYT_RS19065	0.58	+0.2
4,279,207	+		BPHYT_RS19065	0.66	-1.4
4,279,207	+		BPHYT_RS19065	0.66	-0.5
4,279,207	+		BPHYT_RS19065	0.66	-0.3
4,279,207	+		BPHYT_RS19065	0.66	+0.0
4,279,207	+		BPHYT_RS19065	0.66	+1.5
4,279,208	-		BPHYT_RS19065	0.66	+0.3
4,279,208	-		BPHYT_RS19065	0.66	+1.6
4,279,209	+		BPHYT_RS19065	0.66	+0.0
4,279,267	+		BPHYT_RS19065	0.76	-0.3
4,279,399	-				-0.2
4,279,435	+				+1.4
4,279,450	-				-0.4
4,279,496	-				-1.3
4,279,582	+				-0.5
4,279,620	+				-0.5
4,279,620	+				-1.7
4,279,620	+				+3.2
4,279,620	+				-0.6
4,279,621	-				-3.5
4,279,621	-				+1.4
4,279,621	-				-1.1
4,279,626	+				+0.9
4,279,627	-				+0.2
4,279,627	-				+0.1
4,279,793	+				+0.5
4,279,794	-				+0.2
4,279,972	+		BPHYT_RS19070	0.37	-0.1
4,279,972	+		BPHYT_RS19070	0.37	-0.5
4,279,973	-		BPHYT_RS19070	0.38	-0.2
4,280,038	+		BPHYT_RS19070	0.53	-1.7
4,280,041	-		BPHYT_RS19070	0.54	-0.4
4,280,041	-		BPHYT_RS19070	0.54	-1.1
4,280,098	+		BPHYT_RS19070	0.67	-0.2
4,280,098	+		BPHYT_RS19070	0.67	-0.4
4,280,099	-		BPHYT_RS19070	0.67	+0.5
4,280,236	+				-1.5
4,280,245	+				+1.0
4,280,245	+				+1.0
4,280,245	+				+0.5
4,280,260	+				+1.1
4,280,260	+				-1.7
4,280,263	+				+0.1
4,280,264	-				-0.8
4,280,298	+				+0.3
4,280,298	+				+0.3
4,280,304	+				+0.4
4,280,305	-				-1.6
4,280,305	-				+0.3
4,280,338	+				-0.0
4,280,338	+				-0.4
4,280,338	+				-1.5
4,280,339	-				+2.3
4,280,460	-				-4.2
4,280,460	-				-2.1
4,280,460	-				-2.0
4,281,024	-				+1.1
4,281,137	+		BPHYT_RS19080	0.11	+0.2