Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19005

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,267,751	-		BPHYT_RS19000	0.79	-1.6
4,267,998	+		BPHYT_RS19000	0.90	-0.1
4,268,207	+				+0.8
4,268,208	-				+1.3
4,268,300	-				-2.0
4,268,300	-				-1.1
4,268,309	+				+0.0
4,268,309	+				+0.8
4,268,310	-				-1.1
4,268,320	+				+0.9
4,268,450	+		BPHYT_RS19005	0.35	+0.4
4,268,451	-		BPHYT_RS19005	0.35	+0.4
4,268,533	+		BPHYT_RS19005	0.57	-1.2
4,268,533	+		BPHYT_RS19005	0.57	-1.6
4,268,533	+		BPHYT_RS19005	0.57	+0.1
4,268,534	-		BPHYT_RS19005	0.57	-1.5
4,268,534	-		BPHYT_RS19005	0.57	-0.0
4,268,534	-		BPHYT_RS19005	0.57	-0.3
4,268,721	-				+0.8
4,268,721	-				-0.3
4,269,107	+		BPHYT_RS19010	0.32	+0.4
4,269,108	-		BPHYT_RS19010	0.32	+1.2
4,269,128	+		BPHYT_RS19010	0.34	-1.0
4,269,218	+		BPHYT_RS19010	0.43	+1.1
4,269,218	+		BPHYT_RS19010	0.43	-0.9
4,269,218	+		BPHYT_RS19010	0.43	+0.7
4,269,218	+		BPHYT_RS19010	0.43	-0.0
4,269,608	+		BPHYT_RS19010	0.82	-0.4
4,269,608	+		BPHYT_RS19010	0.82	-0.2