Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18960

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,258,303	+				+0.3
4,258,303	+				+1.1
4,258,303	+				-0.1
4,258,303	+				+0.5
4,258,303	+				-0.4
4,258,303	+				-0.4
4,258,304	-				+1.2
4,258,332	+				-0.4
4,258,336	-				+0.8
4,258,506	+		BPHYT_RS18955	0.32	+0.1
4,258,519	-		BPHYT_RS18955	0.34	-0.4
4,258,647	+		BPHYT_RS18955	0.57	-1.3
4,258,647	+		BPHYT_RS18955	0.57	+0.6
4,258,648	-		BPHYT_RS18955	0.58	-0.1
4,258,648	-		BPHYT_RS18955	0.58	-0.6
4,258,742	-		BPHYT_RS18955	0.75	+0.3
4,258,742	-		BPHYT_RS18955	0.75	-0.2
4,258,937	+				+0.1
4,258,937	+				-1.0
4,258,937	+				-0.8
4,258,937	+				+0.4
4,258,938	-				-1.9
4,258,938	-				+2.2
4,258,938	-				-1.2
4,258,938	-				-0.1
4,258,938	-				-1.5
4,258,949	-				+1.9
4,259,046	+				+0.0
4,259,047	-				-0.8
4,259,047	-				-0.8
4,259,047	-				-0.1
4,259,049	+				+0.2
4,259,049	+				-1.0
4,259,049	+				+0.1
4,259,049	+				+1.1
4,259,049	+				+0.3
4,259,050	-				-0.1
4,259,050	-				-0.9
4,259,103	+				+1.9
4,259,103	+				+0.2
4,259,103	+				+0.4
4,259,103	+				-0.2
4,259,103	+				+1.2
4,259,103	+				+2.2
4,259,104	-				-0.1
4,259,104	-				+0.3
4,259,104	-				-0.2
4,259,104	-				+1.4
4,259,388	+		BPHYT_RS18960	0.31	-1.5
4,259,389	-		BPHYT_RS18960	0.31	-1.1
4,259,389	-		BPHYT_RS18960	0.31	-1.9
4,259,688	+		BPHYT_RS18960	0.73	-1.9
4,259,689	-		BPHYT_RS18960	0.73	-2.8
4,259,963	-		BPHYT_RS18965	0.21	-1.4
4,260,128	-		BPHYT_RS18965	0.63	-0.6
4,260,131	+				-0.3
4,260,365	+				-0.8
4,260,366	-				-0.5
4,260,491	-		BPHYT_RS18970	0.12	-2.7
4,260,491	-		BPHYT_RS18970	0.12	-3.3
4,260,520	-		BPHYT_RS18970	0.15	-3.8
4,260,520	-		BPHYT_RS18970	0.15	-1.6
4,260,689	-		BPHYT_RS18970	0.30	-3.0
4,260,689	-		BPHYT_RS18970	0.30	-2.2
4,260,689	-		BPHYT_RS18970	0.30	-2.0
4,260,690	+		BPHYT_RS18970	0.30	-2.5
4,260,690	+		BPHYT_RS18970	0.30	-2.9
4,260,691	-		BPHYT_RS18970	0.30	-1.5
4,260,691	-		BPHYT_RS18970	0.30	-5.1
4,260,691	-		BPHYT_RS18970	0.30	-3.5
4,260,741	+		BPHYT_RS18970	0.35	-1.2
4,260,741	+		BPHYT_RS18970	0.35	-2.1
4,260,741	+		BPHYT_RS18970	0.35	-2.0
4,260,741	+		BPHYT_RS18970	0.35	-2.3
4,260,741	+		BPHYT_RS18970	0.35	-2.2
4,260,741	+		BPHYT_RS18970	0.35	-1.7
4,260,742	-		BPHYT_RS18970	0.35	-3.0
4,260,742	-		BPHYT_RS18970	0.35	-0.8
4,260,742	-		BPHYT_RS18970	0.35	-5.0
4,260,742	-		BPHYT_RS18970	0.35	-1.4
4,260,742	-		BPHYT_RS18970	0.35	-2.4
4,260,784	+		BPHYT_RS18970	0.39	-0.6
4,260,791	-		BPHYT_RS18970	0.39	-1.4
4,260,847	+		BPHYT_RS18970	0.45	-3.6
4,260,847	+		BPHYT_RS18970	0.45	-3.5
4,260,847	+		BPHYT_RS18970	0.45	-2.2
4,260,848	-		BPHYT_RS18970	0.45	-2.1
4,260,848	-		BPHYT_RS18970	0.45	-4.0
4,260,848	-		BPHYT_RS18970	0.45	-3.0