Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18910

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,247,656	+				-0.4
4,247,656	+				-0.6
4,247,657	-				-0.2
4,247,657	-				-0.0
4,247,657	-				-1.1
4,247,666	+				+0.3
4,247,712	+				-1.2
4,247,714	+				-0.6
4,247,714	+				-0.1
4,247,714	+				-0.9
4,248,111	+				+0.2
4,248,503	-		BPHYT_RS18910	0.70	+1.5
4,248,539	+		BPHYT_RS18910	0.78	+2.2
4,248,540	-		BPHYT_RS18910	0.78	+2.6
4,248,596	+				-2.2
4,248,597	-				-1.3
4,248,775	-				+0.3
4,248,837	+				+1.2
4,248,837	+				-0.2
4,248,838	-				-0.4
4,248,896	+				-0.8
4,248,945	+				+0.6
4,249,411	+		BPHYT_RS18920	0.70	+1.2
4,249,411	+		BPHYT_RS18920	0.70	+1.9
4,249,415	+		BPHYT_RS18920	0.71	-0.2
4,249,415	+		BPHYT_RS18920	0.71	+1.8
4,249,421	+		BPHYT_RS18920	0.72	+0.2
4,249,421	+		BPHYT_RS18920	0.72	+0.4
4,249,461	+		BPHYT_RS18920	0.82	-2.2