Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18875

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,240,875	-				-2.0
4,240,909	+				-1.3
4,240,930	+				-0.6
4,240,930	+				-0.6
4,240,930	+				+5.1
4,240,931	-				+1.3
4,241,000	-				-1.2
4,241,065	+		BPHYT_RS18870	0.17	-0.6
4,241,065	+		BPHYT_RS18870	0.17	-1.9
4,241,066	-		BPHYT_RS18870	0.17	-3.3
4,241,378	-		BPHYT_RS18870	0.57	-0.9
4,241,476	+		BPHYT_RS18870	0.69	-2.4
4,241,477	-		BPHYT_RS18870	0.69	-0.8
4,241,582	-		BPHYT_RS18870	0.83	-1.1
4,241,701	+				+0.3
4,241,701	+				-3.4
4,241,701	+				-0.4
4,241,702	-				-2.2
4,241,735	+				-3.6
4,241,736	-				+0.2
4,241,736	-				-1.0
4,242,175	+		BPHYT_RS18875	0.59	-1.2
4,242,176	-		BPHYT_RS18875	0.59	-2.9
4,242,274	+		BPHYT_RS18875	0.72	-0.2
4,242,274	+		BPHYT_RS18875	0.72	-1.5
4,242,275	-		BPHYT_RS18875	0.72	-1.2
4,242,511	-				-0.1
4,242,511	-				-2.5
4,242,574	-				-1.4
4,242,574	-				+0.1
4,242,574	-				-0.8
4,242,909	+		BPHYT_RS18880	0.26	-1.2
4,242,909	+		BPHYT_RS18880	0.26	-0.4
4,242,909	+		BPHYT_RS18880	0.26	-0.1
4,242,910	-		BPHYT_RS18880	0.27	-0.5
4,242,987	+		BPHYT_RS18880	0.32	-1.1
4,242,987	+		BPHYT_RS18880	0.32	-1.7
4,242,987	+		BPHYT_RS18880	0.32	+0.4
4,243,140	+		BPHYT_RS18880	0.42	+0.5
4,243,140	+		BPHYT_RS18880	0.42	-1.5
4,243,140	+		BPHYT_RS18880	0.42	-1.0
4,243,176	+		BPHYT_RS18880	0.44	-0.6
4,243,176	+		BPHYT_RS18880	0.44	-0.2
4,243,176	+		BPHYT_RS18880	0.44	-0.9
4,243,197	+		BPHYT_RS18880	0.46	+0.7
4,243,198	-		BPHYT_RS18880	0.46	-3.4
4,243,203	+		BPHYT_RS18880	0.46	+1.2
4,243,203	+		BPHYT_RS18880	0.46	-0.7
4,243,203	+		BPHYT_RS18880	0.46	-2.9
4,243,204	-		BPHYT_RS18880	0.46	-2.5
4,243,333	-		BPHYT_RS18880	0.54	-1.2
4,243,410	+		BPHYT_RS18880	0.60	-0.5
4,243,410	+		BPHYT_RS18880	0.60	-0.9
4,243,411	-		BPHYT_RS18880	0.60	-0.1
4,243,411	-		BPHYT_RS18880	0.60	-3.2