Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18845

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,233,792	+		BPHYT_RS18840	0.32	-0.4
4,233,928	-		BPHYT_RS18840	0.43	-0.1
4,233,929	+		BPHYT_RS18840	0.43	-0.5
4,233,929	+		BPHYT_RS18840	0.43	+3.4
4,233,929	+		BPHYT_RS18840	0.43	+1.9
4,233,930	-		BPHYT_RS18840	0.43	-0.4
4,233,930	-		BPHYT_RS18840	0.43	-0.5
4,233,930	-		BPHYT_RS18840	0.43	+0.6
4,233,960	-		BPHYT_RS18840	0.45	+0.0
4,233,960	-		BPHYT_RS18840	0.45	+0.4
4,233,960	-		BPHYT_RS18840	0.45	-0.1
4,234,194	-		BPHYT_RS18840	0.64	+1.7
4,234,229	+		BPHYT_RS18840	0.67	-0.7
4,234,356	+		BPHYT_RS18840	0.78	+0.2
4,234,356	+		BPHYT_RS18840	0.78	-1.4
4,234,356	+		BPHYT_RS18840	0.78	-1.2
4,234,377	+		BPHYT_RS18840	0.79	-0.4
4,234,377	+		BPHYT_RS18840	0.79	-1.7
4,234,446	-		BPHYT_RS18840	0.85	+0.5
4,234,551	-				-2.1
4,234,599	+				-1.4
4,234,599	+				-0.2
4,234,600	-				+0.5
4,234,600	-				-0.5
4,234,608	-				-2.6
4,234,722	+				-0.9
4,234,723	-				-0.5
4,234,852	+		BPHYT_RS18845	0.11	-2.0
4,234,863	+		BPHYT_RS18845	0.11	-0.4
4,234,863	+		BPHYT_RS18845	0.11	-1.1
4,235,091	+		BPHYT_RS18845	0.23	+0.5
4,235,091	+		BPHYT_RS18845	0.23	-1.6
4,235,092	-		BPHYT_RS18845	0.23	+0.2
4,235,124	+		BPHYT_RS18845	0.25	-1.5
4,235,124	+		BPHYT_RS18845	0.25	-0.3
4,235,125	-		BPHYT_RS18845	0.25	+0.1
4,235,197	-		BPHYT_RS18845	0.28	-1.7
4,235,496	+		BPHYT_RS18845	0.43	-1.0
4,235,497	-		BPHYT_RS18845	0.43	-1.7
4,235,497	-		BPHYT_RS18845	0.43	-0.6
4,235,511	+		BPHYT_RS18845	0.44	+0.1
4,235,512	-		BPHYT_RS18845	0.44	+2.2
4,235,512	-		BPHYT_RS18845	0.44	+0.7
4,235,601	+		BPHYT_RS18845	0.49	-0.4
4,235,844	+		BPHYT_RS18845	0.61	-0.7
4,235,896	+		BPHYT_RS18845	0.64	-1.1
4,235,898	+		BPHYT_RS18845	0.64	-1.1
4,235,898	+		BPHYT_RS18845	0.64	-0.5
4,235,899	-		BPHYT_RS18845	0.64	-0.4
4,235,899	-		BPHYT_RS18845	0.64	-0.5
4,235,899	-		BPHYT_RS18845	0.64	-0.2
4,235,950	-		BPHYT_RS18845	0.66	-0.1
4,236,065	-		BPHYT_RS18845	0.72	-0.7
4,236,065	-		BPHYT_RS18845	0.72	-0.7
4,236,065	-		BPHYT_RS18845	0.72	-1.0
4,236,099	+		BPHYT_RS18845	0.74	+4.8
4,236,276	+		BPHYT_RS18845	0.83	-0.2
4,236,276	+		BPHYT_RS18845	0.83	-1.2
4,236,277	-		BPHYT_RS18845	0.83	-2.7
4,236,351	+		BPHYT_RS18845	0.87	-0.6
4,236,352	-		BPHYT_RS18845	0.87	-0.9
4,236,405	+		BPHYT_RS18845	0.89	-2.3
4,236,405	+		BPHYT_RS18845	0.89	+2.5
4,236,406	-		BPHYT_RS18845	0.89	-0.5
4,236,415	-		BPHYT_RS18845	0.90	-0.9
4,236,456	+				-1.0
4,236,456	+				+0.6
4,236,471	+				-0.1
4,236,472	-				+0.1
4,236,492	+				+0.9
4,236,493	-				-0.2
4,236,638	+				-1.3
4,236,639	-				+2.2
4,237,209	+		BPHYT_RS18850	0.42	-0.9
4,237,209	+		BPHYT_RS18850	0.42	+0.8
4,237,210	-		BPHYT_RS18850	0.42	+4.9
4,237,210	-		BPHYT_RS18850	0.42	+4.4
4,237,210	-		BPHYT_RS18850	0.42	+4.7
4,237,210	-		BPHYT_RS18850	0.42	+1.0
4,237,247	-		BPHYT_RS18850	0.47	+2.8
4,237,264	+		BPHYT_RS18850	0.49	+5.1
4,237,265	-		BPHYT_RS18850	0.49	+2.3