Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18815

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,229,267	+				-0.2
4,229,268	-				-0.5
4,229,268	-				-0.7
4,229,268	-				-0.1
4,229,268	-				-0.7
4,229,385	-		BPHYT_RS18810	0.11	-2.2
4,229,537	+		BPHYT_RS18810	0.26	+0.2
4,229,617	-		BPHYT_RS18810	0.34	-1.0
4,229,765	+		BPHYT_RS18810	0.49	-1.0
4,229,765	+		BPHYT_RS18810	0.49	-1.5
4,229,765	+		BPHYT_RS18810	0.49	+0.1
4,229,765	+		BPHYT_RS18810	0.49	+0.0
4,229,765	+		BPHYT_RS18810	0.49	+1.3
4,229,766	-		BPHYT_RS18810	0.49	-1.4
4,229,766	-		BPHYT_RS18810	0.49	-1.9
4,229,917	+		BPHYT_RS18810	0.64	+0.1
4,229,917	+		BPHYT_RS18810	0.64	-1.5
4,229,918	-		BPHYT_RS18810	0.65	+0.8
4,229,918	-		BPHYT_RS18810	0.65	+0.0
4,229,918	-		BPHYT_RS18810	0.65	-2.6
4,229,918	-		BPHYT_RS18810	0.65	-1.3
4,229,918	-		BPHYT_RS18810	0.65	-0.9
4,230,207	-				-0.2
4,230,263	+				-0.1
4,230,264	-				-1.0
4,230,264	-				+0.1
4,230,692	+				-0.9
4,230,693	-				-0.4
4,230,824	+				-0.3
4,230,825	-				-1.6
4,231,115	-		BPHYT_RS18820	0.57	-1.5
4,231,284	+		BPHYT_RS18820	0.90	+0.8
4,231,284	+		BPHYT_RS18820	0.90	-1.8
4,231,547	-		BPHYT_RS18825	0.25	-0.3