Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18760 and BPHYT_RS18765 overlap by 4 nucleotides BPHYT_RS18765 and BPHYT_RS18770 are separated by 216 nucleotides BPHYT_RS18770 and BPHYT_RS18775 are separated by 235 nucleotides
BPHYT_RS18760: BPHYT_RS18760 - flagellar biosynthesis protein FliT, at 4,219,551 to 4,219,877
_RS18760
BPHYT_RS18765: BPHYT_RS18765 - flagellar biosynthesis protein FliS, at 4,219,874 to 4,220,308
_RS18765
BPHYT_RS18770: BPHYT_RS18770 - flagellar hook-basal body protein FliE, at 4,220,525 to 4,220,860
_RS18770
BPHYT_RS18775: BPHYT_RS18775 - flagellar M-ring protein FliF, at 4,221,096 to 4,222,907
_RS18775
Position (kb) 4220
4221 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4219.685 kb on - strand, within BPHYT_RS18760 at 4219.685 kb on - strand, within BPHYT_RS18760 at 4219.759 kb on + strand, within BPHYT_RS18760 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.030 kb on - strand, within BPHYT_RS18765 at 4220.032 kb on - strand, within BPHYT_RS18765 at 4220.032 kb on - strand, within BPHYT_RS18765 at 4220.032 kb on - strand, within BPHYT_RS18765 at 4220.036 kb on - strand, within BPHYT_RS18765 at 4220.036 kb on - strand, within BPHYT_RS18765 at 4220.038 kb on - strand, within BPHYT_RS18765 at 4220.038 kb on - strand, within BPHYT_RS18765 at 4220.275 kb on - strand at 4220.275 kb on - strand at 4220.388 kb on - strand at 4220.388 kb on - strand at 4220.388 kb on - strand at 4220.388 kb on - strand at 4220.420 kb on + strand at 4220.421 kb on - strand at 4220.440 kb on + strand at 4220.441 kb on - strand at 4220.553 kb on + strand at 4220.554 kb on - strand at 4220.779 kb on + strand, within BPHYT_RS18770 at 4220.932 kb on - strand at 4220.950 kb on + strand at 4220.970 kb on - strand at 4220.970 kb on - strand at 4220.970 kb on - strand at 4221.363 kb on + strand, within BPHYT_RS18775 at 4221.364 kb on - strand, within BPHYT_RS18775 at 4221.364 kb on - strand, within BPHYT_RS18775 at 4221.442 kb on - strand, within BPHYT_RS18775 at 4221.442 kb on - strand, within BPHYT_RS18775 at 4221.442 kb on - strand, within BPHYT_RS18775 at 4221.442 kb on - strand, within BPHYT_RS18775 at 4221.606 kb on + strand, within BPHYT_RS18775 at 4221.606 kb on + strand, within BPHYT_RS18775 at 4221.606 kb on + strand, within BPHYT_RS18775 at 4221.607 kb on - strand, within BPHYT_RS18775 at 4221.800 kb on + strand, within BPHYT_RS18775 at 4221.800 kb on + strand, within BPHYT_RS18775 at 4221.800 kb on + strand, within BPHYT_RS18775 at 4221.800 kb on + strand, within BPHYT_RS18775 at 4221.800 kb on + strand, within BPHYT_RS18775 at 4221.801 kb on - strand, within BPHYT_RS18775 at 4221.801 kb on - strand, within BPHYT_RS18775
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 4,219,685 - BPHYT_RS18760 0.41 -3.6 4,219,685 - BPHYT_RS18760 0.41 -2.5 4,219,759 + BPHYT_RS18760 0.64 -2.2 4,220,030 - BPHYT_RS18765 0.36 -1.5 4,220,030 - BPHYT_RS18765 0.36 -0.8 4,220,030 - BPHYT_RS18765 0.36 -1.8 4,220,030 - BPHYT_RS18765 0.36 -1.7 4,220,030 - BPHYT_RS18765 0.36 -1.5 4,220,032 - BPHYT_RS18765 0.36 -2.5 4,220,032 - BPHYT_RS18765 0.36 -2.7 4,220,032 - BPHYT_RS18765 0.36 +0.6 4,220,036 - BPHYT_RS18765 0.37 -4.1 4,220,036 - BPHYT_RS18765 0.37 -1.4 4,220,038 - BPHYT_RS18765 0.38 +1.2 4,220,038 - BPHYT_RS18765 0.38 -1.3 4,220,275 - -0.1 4,220,275 - -0.8 4,220,388 - +0.1 4,220,388 - +0.1 4,220,388 - +0.7 4,220,388 - +0.8 4,220,420 + -2.9 4,220,421 - +2.2 4,220,440 + -0.1 4,220,441 - +0.2 4,220,553 + -1.3 4,220,554 - -0.1 4,220,779 + BPHYT_RS18770 0.76 -0.4 4,220,932 - +0.3 4,220,950 + -0.3 4,220,970 - -1.6 4,220,970 - -1.5 4,220,970 - -0.3 4,221,363 + BPHYT_RS18775 0.15 -0.4 4,221,364 - BPHYT_RS18775 0.15 -1.4 4,221,364 - BPHYT_RS18775 0.15 -0.8 4,221,442 - BPHYT_RS18775 0.19 -1.6 4,221,442 - BPHYT_RS18775 0.19 -1.0 4,221,442 - BPHYT_RS18775 0.19 +0.4 4,221,442 - BPHYT_RS18775 0.19 +0.2 4,221,606 + BPHYT_RS18775 0.28 -0.2 4,221,606 + BPHYT_RS18775 0.28 -2.2 4,221,606 + BPHYT_RS18775 0.28 +0.0 4,221,607 - BPHYT_RS18775 0.28 +2.6 4,221,800 + BPHYT_RS18775 0.39 +1.4 4,221,800 + BPHYT_RS18775 0.39 -0.3 4,221,800 + BPHYT_RS18775 0.39 -1.1 4,221,800 + BPHYT_RS18775 0.39 -1.8 4,221,800 + BPHYT_RS18775 0.39 -0.9 4,221,801 - BPHYT_RS18775 0.39 +1.2 4,221,801 - BPHYT_RS18775 0.39 -1.2
Or see this region's nucleotide sequence