Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18695

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,202,641	-		BPHYT_RS18690	0.56	-0.3
4,202,641	-		BPHYT_RS18690	0.56	+0.5
4,202,682	+		BPHYT_RS18690	0.59	-0.3
4,202,683	-		BPHYT_RS18690	0.59	+0.6
4,202,683	-		BPHYT_RS18690	0.59	-0.1
4,202,910	+		BPHYT_RS18690	0.73	-0.0
4,202,911	-		BPHYT_RS18690	0.73	+1.5
4,202,936	-		BPHYT_RS18690	0.74	-0.0
4,203,063	+		BPHYT_RS18690	0.82	-0.2
4,203,064	-		BPHYT_RS18690	0.82	-1.4
4,203,064	-		BPHYT_RS18690	0.82	+0.3
4,203,154	-		BPHYT_RS18690	0.88	-0.5
4,203,167	-		BPHYT_RS18690	0.88	+0.2
4,203,167	-		BPHYT_RS18690	0.88	-2.0
4,203,195	+				+0.5
4,203,195	+				-0.1
4,203,320	-				-0.1
4,203,392	-				+0.1
4,203,392	-				-1.2
4,203,399	+				-1.9
4,203,402	+				-0.2
4,203,402	+				+0.4
4,203,402	+				+0.5
4,203,403	-				-0.2
4,203,403	-				-0.2
4,203,403	-				-1.4
4,203,403	-				+0.2
4,203,598	+				+1.1
4,203,599	-				-1.6
4,203,599	-				+1.0
4,203,599	-				-0.1
4,203,745	+				+0.0
4,203,746	-				+1.3
4,203,746	-				+2.4
4,203,806	-		BPHYT_RS18695	0.13	-0.1
4,203,814	+		BPHYT_RS18695	0.13	+0.0
4,203,951	-		BPHYT_RS18695	0.22	-0.7
4,203,951	-		BPHYT_RS18695	0.22	+0.2
4,203,951	-		BPHYT_RS18695	0.22	+0.4
4,203,952	+		BPHYT_RS18695	0.22	+1.7
4,203,953	-		BPHYT_RS18695	0.22	+1.0
4,203,953	-		BPHYT_RS18695	0.22	+0.1
4,203,967	+		BPHYT_RS18695	0.23	+0.5
4,203,968	-		BPHYT_RS18695	0.23	+0.7
4,203,968	-		BPHYT_RS18695	0.23	-0.3
4,204,048	+		BPHYT_RS18695	0.27	-0.5
4,204,222	+		BPHYT_RS18695	0.38	-1.1
4,204,222	+		BPHYT_RS18695	0.38	+0.1
4,204,222	+		BPHYT_RS18695	0.38	-0.3
4,204,223	-		BPHYT_RS18695	0.38	-0.9
4,204,247	+		BPHYT_RS18695	0.40	-0.1
4,204,248	-		BPHYT_RS18695	0.40	-1.1
4,204,305	-		BPHYT_RS18695	0.43	-1.0
4,204,313	-		BPHYT_RS18695	0.44	+0.6
4,204,313	-		BPHYT_RS18695	0.44	+0.2
4,204,386	-		BPHYT_RS18695	0.48	+0.4
4,204,402	+		BPHYT_RS18695	0.49	+0.3
4,204,624	+		BPHYT_RS18695	0.62	-0.1
4,204,723	+		BPHYT_RS18695	0.68	-1.1
4,204,723	+		BPHYT_RS18695	0.68	-0.2
4,204,723	+		BPHYT_RS18695	0.68	+0.9
4,204,724	-		BPHYT_RS18695	0.69	+0.4
4,204,724	-		BPHYT_RS18695	0.69	+0.5
4,204,780	+		BPHYT_RS18695	0.72	+0.0
4,204,781	-		BPHYT_RS18695	0.72	-0.4
4,204,781	-		BPHYT_RS18695	0.72	+0.0
4,204,840	+		BPHYT_RS18695	0.76	+0.1
4,204,840	+		BPHYT_RS18695	0.76	+1.6
4,204,840	+		BPHYT_RS18695	0.76	-0.3
4,204,840	+		BPHYT_RS18695	0.76	+0.6
4,204,931	+		BPHYT_RS18695	0.81	+0.2
4,204,931	+		BPHYT_RS18695	0.81	+0.1
4,204,932	-		BPHYT_RS18695	0.81	+0.3
4,204,932	-		BPHYT_RS18695	0.81	-0.3
4,204,932	-		BPHYT_RS18695	0.81	-1.9
4,204,933	+		BPHYT_RS18695	0.81	-1.4
4,204,934	-		BPHYT_RS18695	0.81	-2.2
4,204,954	-		BPHYT_RS18695	0.83	+0.7
4,205,024	-		BPHYT_RS18695	0.87	-0.2
4,205,024	-		BPHYT_RS18695	0.87	-0.7
4,205,032	+		BPHYT_RS18695	0.87	-2.7
4,205,066	-		BPHYT_RS18695	0.89	+0.5
4,205,066	-		BPHYT_RS18695	0.89	+1.7
4,205,283	+				-2.3
4,205,283	+				-1.8
4,205,283	+				-0.9
4,205,284	-				-0.9
4,205,316	+		BPHYT_RS18700	0.16	+0.4
4,205,316	+		BPHYT_RS18700	0.16	+0.5
4,205,317	-		BPHYT_RS18700	0.16	+0.4
4,205,351	-		BPHYT_RS18700	0.29	+0.1
4,205,351	-		BPHYT_RS18700	0.29	+0.5
4,205,439	-		BPHYT_RS18700	0.63	+0.2
4,205,597	-				-1.1
4,205,597	-				-2.6
4,205,870	-		BPHYT_RS18705	0.40	-0.7
4,205,957	-		BPHYT_RS18705	0.50	-1.4
4,206,011	+		BPHYT_RS18705	0.57	+0.3