Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18450 and BPHYT_RS18455 are separated by 471 nucleotides BPHYT_RS18455 and BPHYT_RS18460 are separated by 13 nucleotides
BPHYT_RS18450: BPHYT_RS18450 - voltage-gated chloride channel protein, at 4,146,190 to 4,147,500
_RS18450
BPHYT_RS18455: BPHYT_RS18455 - arsenic resistance operon repressor, at 4,147,972 to 4,148,337
_RS18455
BPHYT_RS18460: BPHYT_RS18460 - arsenic transporter ATPase, at 4,148,351 to 4,150,105
_RS18460
Position (kb) 4147
4148
4149 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4146.997 kb on + strand, within BPHYT_RS18450 at 4147.057 kb on + strand, within BPHYT_RS18450 at 4147.102 kb on + strand, within BPHYT_RS18450 at 4147.180 kb on + strand, within BPHYT_RS18450 at 4147.215 kb on + strand, within BPHYT_RS18450 at 4147.215 kb on + strand, within BPHYT_RS18450 at 4147.216 kb on - strand, within BPHYT_RS18450 at 4147.273 kb on + strand, within BPHYT_RS18450 at 4147.482 kb on + strand at 4147.482 kb on + strand at 4147.588 kb on - strand at 4147.588 kb on - strand at 4147.672 kb on - strand at 4147.702 kb on + strand at 4147.723 kb on + strand at 4147.723 kb on + strand at 4147.724 kb on - strand at 4147.766 kb on + strand at 4147.766 kb on + strand at 4147.872 kb on - strand at 4147.872 kb on - strand at 4148.059 kb on - strand, within BPHYT_RS18455 at 4148.196 kb on - strand, within BPHYT_RS18455 at 4148.228 kb on + strand, within BPHYT_RS18455 at 4148.229 kb on - strand, within BPHYT_RS18455 at 4148.230 kb on + strand, within BPHYT_RS18455 at 4148.287 kb on - strand, within BPHYT_RS18455 at 4148.350 kb on + strand at 4148.351 kb on - strand at 4148.351 kb on - strand at 4148.368 kb on + strand at 4148.432 kb on - strand at 4148.756 kb on + strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.907 kb on - strand, within BPHYT_RS18460 at 4149.120 kb on + strand, within BPHYT_RS18460 at 4149.120 kb on + strand, within BPHYT_RS18460 at 4149.120 kb on + strand, within BPHYT_RS18460 at 4149.121 kb on - strand, within BPHYT_RS18460 at 4149.121 kb on - strand, within BPHYT_RS18460 at 4149.121 kb on - strand, within BPHYT_RS18460 at 4149.124 kb on + strand, within BPHYT_RS18460 at 4149.124 kb on + strand, within BPHYT_RS18460 at 4149.125 kb on - strand, within BPHYT_RS18460
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 4,146,997 + BPHYT_RS18450 0.62 +0.4 4,147,057 + BPHYT_RS18450 0.66 +0.1 4,147,102 + BPHYT_RS18450 0.70 -0.4 4,147,180 + BPHYT_RS18450 0.76 +2.7 4,147,215 + BPHYT_RS18450 0.78 -0.4 4,147,215 + BPHYT_RS18450 0.78 +0.4 4,147,216 - BPHYT_RS18450 0.78 +0.5 4,147,273 + BPHYT_RS18450 0.83 -0.0 4,147,482 + +0.1 4,147,482 + -0.9 4,147,588 - +0.5 4,147,588 - -0.4 4,147,672 - +0.2 4,147,702 + +0.2 4,147,723 + +0.4 4,147,723 + -0.4 4,147,724 - -0.8 4,147,766 + +1.2 4,147,766 + +0.4 4,147,872 - -0.2 4,147,872 - -0.1 4,148,059 - BPHYT_RS18455 0.24 +0.5 4,148,196 - BPHYT_RS18455 0.61 -0.3 4,148,228 + BPHYT_RS18455 0.70 +0.6 4,148,229 - BPHYT_RS18455 0.70 +0.6 4,148,230 + BPHYT_RS18455 0.70 +0.3 4,148,287 - BPHYT_RS18455 0.86 +0.2 4,148,350 + -4.1 4,148,351 - -1.3 4,148,351 - -0.4 4,148,368 + -0.8 4,148,432 - -0.4 4,148,756 + BPHYT_RS18460 0.23 -0.0 4,148,757 - BPHYT_RS18460 0.23 -0.0 4,148,757 - BPHYT_RS18460 0.23 +1.0 4,148,757 - BPHYT_RS18460 0.23 -0.9 4,148,757 - BPHYT_RS18460 0.23 -0.6 4,148,757 - BPHYT_RS18460 0.23 +0.5 4,148,906 + BPHYT_RS18460 0.32 -1.9 4,148,906 + BPHYT_RS18460 0.32 -0.2 4,148,906 + BPHYT_RS18460 0.32 -0.4 4,148,906 + BPHYT_RS18460 0.32 +0.5 4,148,906 + BPHYT_RS18460 0.32 -0.6 4,148,907 - BPHYT_RS18460 0.32 +2.3 4,149,120 + BPHYT_RS18460 0.44 -0.1 4,149,120 + BPHYT_RS18460 0.44 +0.8 4,149,120 + BPHYT_RS18460 0.44 +0.6 4,149,121 - BPHYT_RS18460 0.44 +0.6 4,149,121 - BPHYT_RS18460 0.44 -0.5 4,149,121 - BPHYT_RS18460 0.44 -0.9 4,149,124 + BPHYT_RS18460 0.44 -0.2 4,149,124 + BPHYT_RS18460 0.44 +3.9 4,149,125 - BPHYT_RS18460 0.44 +0.3
Or see this region's nucleotide sequence