Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18140

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,080,350	+				-0.3
4,080,350	+				+0.7
4,080,489	+		BPHYT_RS18145	0.15	+1.3
4,080,490	-		BPHYT_RS18145	0.15	-1.0
4,080,500	+		BPHYT_RS18145	0.16	-1.9
4,080,500	+		BPHYT_RS18145	0.16	-0.0
4,080,733	+		BPHYT_RS18145	0.29	+0.4
4,080,733	+		BPHYT_RS18145	0.29	+0.0
4,080,734	-		BPHYT_RS18145	0.29	-0.6
4,080,734	-		BPHYT_RS18145	0.29	+1.5
4,080,884	+		BPHYT_RS18145	0.37	-0.4