Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17960

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,055,170	-				-0.2
4,055,187	+				-2.8
4,055,187	+				-2.5
4,055,187	+				-2.6
4,055,196	-				+0.3
4,055,196	-				-2.0
4,055,258	-		BPHYT_RS17955	0.14	-2.2
4,055,415	+		BPHYT_RS17955	0.38	-3.3
4,055,487	+		BPHYT_RS17955	0.49	-3.3
4,055,614	-		BPHYT_RS17955	0.68	-2.1
4,055,614	-		BPHYT_RS17955	0.68	-3.0
4,055,659	+		BPHYT_RS17955	0.75	-0.9
4,055,660	-		BPHYT_RS17955	0.75	-2.3
4,055,690	+		BPHYT_RS17955	0.80	-0.9
4,055,691	-		BPHYT_RS17955	0.80	-0.7
4,055,691	-		BPHYT_RS17955	0.80	-2.2
4,055,691	-		BPHYT_RS17955	0.80	-1.0
4,055,691	-		BPHYT_RS17955	0.80	-1.7
4,055,784	-				-1.5
4,055,784	-				-1.9
4,055,993	+				-2.1
4,055,993	+				-2.1
4,055,993	+				-0.1
4,055,993	+				-1.9
4,055,994	-				-1.3
4,055,994	-				-0.7
4,055,999	-				+2.5
4,055,999	-				+0.2
4,055,999	-				+0.4
4,056,003	+				-0.5
4,056,737	+				-0.2
4,056,738	-				-0.5
4,056,828	+				+0.3
4,056,828	+				+0.5
4,056,829	-				-0.4
4,056,829	-				-0.1
4,056,829	-				+1.0
4,056,829	-				+1.4
4,056,905	-				-0.4
4,056,905	-				+1.0
4,056,909	+				+0.4
4,056,909	+				+0.6
4,056,909	+				+0.5
4,056,910	-				+0.7
4,056,910	-				+1.8
4,056,910	-				-0.0
4,056,910	-				-0.2
4,056,911	+				+2.2
4,056,911	+				+1.7
4,056,911	+				+0.4
4,056,911	+				+0.4
4,056,911	+				+0.2
4,056,911	+				-2.3
4,056,911	+				-0.5
4,056,911	+				+0.1
4,056,911	+				-0.2
4,056,911	+				+0.6
4,056,911	+				+1.1
4,056,912	-				-2.0
4,056,912	-				+1.2
4,056,912	-				-0.4
4,056,952	+				+0.7