Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17945

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,050,551	+		BPHYT_RS17940	0.19	+1.1
4,050,551	+		BPHYT_RS17940	0.19	-0.0
4,050,551	+		BPHYT_RS17940	0.19	+1.0
4,050,551	+		BPHYT_RS17940	0.19	+0.8
4,050,551	+		BPHYT_RS17940	0.19	+0.1
4,050,551	+		BPHYT_RS17940	0.19	+0.6
4,050,552	-		BPHYT_RS17940	0.19	-0.7
4,050,552	-		BPHYT_RS17940	0.19	+0.8
4,050,552	-		BPHYT_RS17940	0.19	-0.3
4,050,552	-		BPHYT_RS17940	0.19	+0.7
4,050,555	+		BPHYT_RS17940	0.20	+0.4
4,050,555	+		BPHYT_RS17940	0.20	-2.2
4,050,555	+		BPHYT_RS17940	0.20	+0.1
4,050,627	-		BPHYT_RS17940	0.27	+0.9
4,050,749	+		BPHYT_RS17940	0.39	+2.7
4,050,821	+		BPHYT_RS17940	0.46	-0.1
4,050,821	+		BPHYT_RS17940	0.46	+1.1
4,050,822	-		BPHYT_RS17940	0.47	+0.9
4,050,822	-		BPHYT_RS17940	0.47	-0.2
4,050,822	-		BPHYT_RS17940	0.47	-0.3
4,050,923	+		BPHYT_RS17940	0.57	-0.6
4,050,923	+		BPHYT_RS17940	0.57	+0.1
4,050,924	-		BPHYT_RS17940	0.57	-0.6
4,050,971	+		BPHYT_RS17940	0.62	-1.8
4,050,971	+				+2.9
4,050,971	+		BPHYT_RS17940	0.62	-0.3
4,050,972	-		BPHYT_RS17940	0.62	+2.6
4,051,076	+		BPHYT_RS17940	0.72	-0.1
4,051,088	+		BPHYT_RS17940	0.73	+0.9
4,051,088	+		BPHYT_RS17940	0.73	+1.8
4,051,089	-		BPHYT_RS17940	0.73	-1.1
4,051,089	-		BPHYT_RS17940	0.73	-0.0
4,051,089	-		BPHYT_RS17940	0.73	-0.1
4,051,089	-		BPHYT_RS17940	0.73	+1.0
4,051,106	+		BPHYT_RS17940	0.75	+0.1
4,051,106	+		BPHYT_RS17940	0.75	-0.2
4,051,187	+		BPHYT_RS17940	0.83	-0.4
4,051,188	-		BPHYT_RS17940	0.83	+0.2
4,051,431	+				+0.4
4,051,431	+				-0.9
4,051,432	-				+1.7
4,051,470	+				+0.3
4,051,471	-				-0.5
4,051,484	+				-0.6
4,051,519	+				+4.0
4,051,541	+				-0.3
4,051,542	-				-0.3
4,052,574	-		BPHYT_RS17945	0.85	-5.6
4,052,856	-				+2.5