Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17915 and BPHYT_RS17920 are separated by 123 nucleotides BPHYT_RS17920 and BPHYT_RS17925 are separated by 145 nucleotides BPHYT_RS17925 and BPHYT_RS17930 are separated by 22 nucleotides
BPHYT_RS17915: BPHYT_RS17915 - penicillin-binding protein 1A, at 4,045,074 to 4,047,473
_RS17915
BPHYT_RS17920: BPHYT_RS17920 - protein CyaY, at 4,047,597 to 4,047,914
_RS17920
BPHYT_RS17925: BPHYT_RS17925 - hypothetical protein, at 4,048,060 to 4,048,275
_RS17925
BPHYT_RS17930: BPHYT_RS17930 - diaminopimelate decarboxylase, at 4,048,298 to 4,049,560
_RS17930
Position (kb) 4048
4049 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4047.485 kb on - strand at 4047.485 kb on - strand at 4047.485 kb on - strand at 4047.517 kb on + strand at 4047.681 kb on - strand, within BPHYT_RS17920 at 4047.899 kb on - strand at 4047.931 kb on + strand at 4047.935 kb on + strand at 4048.141 kb on + strand, within BPHYT_RS17925 at 4048.142 kb on - strand, within BPHYT_RS17925 at 4048.320 kb on - strand at 4048.392 kb on - strand at 4048.397 kb on + strand at 4048.784 kb on + strand, within BPHYT_RS17930 at 4048.784 kb on + strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.847 kb on + strand, within BPHYT_RS17930 at 4048.848 kb on - strand, within BPHYT_RS17930 at 4048.900 kb on + strand, within BPHYT_RS17930 at 4048.901 kb on - strand, within BPHYT_RS17930 at 4049.033 kb on + strand, within BPHYT_RS17930 at 4049.034 kb on - strand, within BPHYT_RS17930 at 4049.123 kb on + strand, within BPHYT_RS17930 at 4049.124 kb on - strand, within BPHYT_RS17930 at 4049.124 kb on - strand, within BPHYT_RS17930 at 4049.124 kb on - strand, within BPHYT_RS17930 at 4049.124 kb on - strand, within BPHYT_RS17930 at 4049.258 kb on + strand, within BPHYT_RS17930 at 4049.259 kb on - strand, within BPHYT_RS17930 at 4049.268 kb on - strand, within BPHYT_RS17930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 4,047,485 - -1.6 4,047,485 - -1.2 4,047,485 - +0.1 4,047,517 + +3.1 4,047,681 - BPHYT_RS17920 0.26 -4.1 4,047,899 - -4.1 4,047,931 + -1.3 4,047,935 + -1.9 4,048,141 + BPHYT_RS17925 0.38 +1.3 4,048,142 - BPHYT_RS17925 0.38 +1.1 4,048,320 - +0.2 4,048,392 - +0.5 4,048,397 + +0.7 4,048,784 + BPHYT_RS17930 0.38 -0.7 4,048,784 + BPHYT_RS17930 0.38 -0.8 4,048,785 - BPHYT_RS17930 0.39 +0.7 4,048,785 - BPHYT_RS17930 0.39 -0.3 4,048,785 - BPHYT_RS17930 0.39 +0.7 4,048,785 - BPHYT_RS17930 0.39 -0.2 4,048,847 + BPHYT_RS17930 0.43 +1.0 4,048,848 - BPHYT_RS17930 0.44 +0.4 4,048,900 + BPHYT_RS17930 0.48 -0.4 4,048,901 - BPHYT_RS17930 0.48 +0.9 4,049,033 + BPHYT_RS17930 0.58 -0.8 4,049,034 - BPHYT_RS17930 0.58 -0.2 4,049,123 + BPHYT_RS17930 0.65 -0.4 4,049,124 - BPHYT_RS17930 0.65 +0.3 4,049,124 - BPHYT_RS17930 0.65 +0.8 4,049,124 - BPHYT_RS17930 0.65 +1.0 4,049,124 - BPHYT_RS17930 0.65 +1.0 4,049,258 + BPHYT_RS17930 0.76 -0.8 4,049,259 - BPHYT_RS17930 0.76 -1.0 4,049,268 - BPHYT_RS17930 0.77 +3.0
Or see this region's nucleotide sequence