Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17900

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,041,284	+		BPHYT_RS17895	0.49	+0.8
4,041,284	+		BPHYT_RS17895	0.49	-0.1
4,041,987	-		BPHYT_RS17895	0.89	+0.1
4,042,028	+				+2.1
4,042,029	-				+0.3
4,042,114	+				-0.0
4,042,137	+				-0.5
4,042,138	-				-1.3
4,042,158	+				+0.6
4,042,159	-				+0.5
4,042,161	-				-0.5
4,042,587	+		BPHYT_RS17900	0.43	+1.1
4,042,677	-		BPHYT_RS17900	0.53	+1.3
4,042,677	-		BPHYT_RS17900	0.53	+0.5
4,043,108	+				-0.9
4,043,414	+		BPHYT_RS17905	0.42	-2.2
4,043,459	+		BPHYT_RS17905	0.48	-1.2
4,043,459	+		BPHYT_RS17905	0.48	+0.2
4,043,466	-		BPHYT_RS17905	0.49	-1.9
4,043,959	+		BPHYT_RS17910	0.13	-0.2
4,043,960	-		BPHYT_RS17910	0.13	+0.3