Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17860

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,033,860	+		BPHYT_RS17855	0.86	-1.2
4,033,864	-		BPHYT_RS17855	0.86	-3.2
4,033,900	-		BPHYT_RS17855	0.87	-6.5
4,033,936	-		BPHYT_RS17855	0.87	-5.6
4,033,936	-		BPHYT_RS17855	0.87	-7.1
4,033,952	-		BPHYT_RS17855	0.88	-1.7
4,033,998	+		BPHYT_RS17855	0.89	-3.0
4,033,998	+		BPHYT_RS17855	0.89	-4.1
4,033,998	+		BPHYT_RS17855	0.89	-1.7
4,033,999	-		BPHYT_RS17855	0.89	-2.6
4,033,999	-		BPHYT_RS17855	0.89	-3.1
4,033,999	-		BPHYT_RS17855	0.89	-4.2
4,033,999	-		BPHYT_RS17855	0.89	-5.2
4,034,287	-				-4.9
4,034,287	-				-2.5
4,034,475	+				-1.0
4,034,475	+				-6.1
4,034,476	-				-2.0
4,034,576	-				-1.6
4,034,627	-				-1.2
4,034,627	-				+1.1
4,034,917	-		BPHYT_RS17860	0.13	+0.3
4,035,120	+		BPHYT_RS17860	0.42	-1.2
4,035,121	-		BPHYT_RS17860	0.42	-0.9
4,035,192	+		BPHYT_RS17860	0.52	+0.1
4,035,215	-		BPHYT_RS17860	0.56	+0.4
4,035,280	-		BPHYT_RS17860	0.65	-0.2
4,035,280	-		BPHYT_RS17860	0.65	-1.8
4,035,432	+		BPHYT_RS17860	0.86	-1.0
4,035,507	+				+0.2
4,035,507	+				-0.5
4,035,507	+				+1.0
4,035,507	+				-1.7
4,035,507	+				+0.5
4,035,507	+				-1.1
4,035,507	+				-1.3
4,035,507	+				+0.1
4,035,507	+				+0.3
4,035,556	+				-0.5
4,035,557	-				-0.4
4,035,557	-				-3.4
4,035,557	-				-2.3
4,035,557	-				+0.5
4,035,660	-				-0.3
4,035,680	+				+0.7
4,035,680	+				+0.5
4,035,687	-				-2.5
4,035,716	+				+0.1
4,035,801	+		BPHYT_RS17865	0.12	+0.8
4,035,801	+		BPHYT_RS17865	0.12	-0.9
4,035,827	-		BPHYT_RS17865	0.15	-1.3
4,036,089	+		BPHYT_RS17865	0.51	+0.5
4,036,093	-		BPHYT_RS17865	0.52	-0.3
4,036,220	+		BPHYT_RS17865	0.69	+0.1
4,036,221	-		BPHYT_RS17865	0.69	-0.5
4,036,223	+		BPHYT_RS17865	0.70	-1.0
4,036,224	-		BPHYT_RS17865	0.70	-0.9
4,036,229	+		BPHYT_RS17865	0.71	+0.5
4,036,230	-		BPHYT_RS17865	0.71	-1.2
4,036,266	+		BPHYT_RS17865	0.76	-0.0
4,036,267	-		BPHYT_RS17865	0.76	-0.0
4,036,267	-		BPHYT_RS17865	0.76	-1.2
4,036,297	+		BPHYT_RS17865	0.80	-1.1
4,036,308	+		BPHYT_RS17865	0.81	-0.9
4,036,416	+				-0.0
4,036,471	+		BPHYT_RS17870	0.12	-0.8
4,036,471	+		BPHYT_RS17870	0.12	-1.5
4,036,471	+		BPHYT_RS17870	0.12	-0.4
4,036,471	+		BPHYT_RS17870	0.12	-0.7
4,036,472	-		BPHYT_RS17870	0.12	-1.2
4,036,472	-		BPHYT_RS17870	0.12	+2.1
4,036,477	-		BPHYT_RS17870	0.14	+0.3