Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17855

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
4,029,718	-				-2.5
4,029,718	-				-4.2
4,029,718	-				-2.0
4,029,728	-				-0.5
4,029,790	+				-1.4
4,029,791	-				-1.8
4,029,791	-				-2.8
4,029,791	-				-0.0
4,029,885	+				-1.0
4,029,886	-				+0.0
4,030,135	-				-2.5
4,030,135	-				-0.3
4,030,332	+		BPHYT_RS17855	0.11	+0.7
4,030,523	-		BPHYT_RS17855	0.15	-3.3
4,030,558	-		BPHYT_RS17855	0.16	-1.3
4,030,558	-		BPHYT_RS17855	0.16	-2.3
4,030,758	+		BPHYT_RS17855	0.20	-0.0
4,030,759	-		BPHYT_RS17855	0.20	-3.7
4,030,759	-		BPHYT_RS17855	0.20	-1.3
4,030,759	-		BPHYT_RS17855	0.20	-6.1
4,031,400	+		BPHYT_RS17855	0.34	-1.2
4,031,470	-		BPHYT_RS17855	0.35	-5.5
4,031,974	-		BPHYT_RS17855	0.46	-1.3
4,031,983	-		BPHYT_RS17855	0.46	-2.5
4,031,983	-		BPHYT_RS17855	0.46	-4.0
4,032,076	-		BPHYT_RS17855	0.48	-5.2
4,032,076	-		BPHYT_RS17855	0.48	-4.7
4,032,340	-		BPHYT_RS17855	0.53	-2.8
4,032,548	-		BPHYT_RS17855	0.58	-2.6
4,032,742	-		BPHYT_RS17855	0.62	-3.4
4,032,943	-		BPHYT_RS17855	0.66	-2.2
4,032,943	-		BPHYT_RS17855	0.66	-1.5
4,032,948	+		BPHYT_RS17855	0.66	-1.0
4,032,949	-		BPHYT_RS17855	0.66	-2.6
4,033,189	-		BPHYT_RS17855	0.72	-4.8
4,033,371	+		BPHYT_RS17855	0.75	-2.7
4,033,372	-		BPHYT_RS17855	0.75	-3.1
4,033,479	+		BPHYT_RS17855	0.78	-2.4
4,033,485	+		BPHYT_RS17855	0.78	-1.6
4,033,486	-		BPHYT_RS17855	0.78	-3.4
4,033,486	-		BPHYT_RS17855	0.78	-5.6
4,033,762	-		BPHYT_RS17855	0.84	-1.4
4,033,860	+		BPHYT_RS17855	0.86	-1.2
4,033,864	-		BPHYT_RS17855	0.86	-3.2
4,033,900	-		BPHYT_RS17855	0.87	-6.5
4,033,936	-		BPHYT_RS17855	0.87	-5.6
4,033,936	-		BPHYT_RS17855	0.87	-7.1
4,033,952	-		BPHYT_RS17855	0.88	-1.7
4,033,998	+		BPHYT_RS17855	0.89	-3.0
4,033,998	+		BPHYT_RS17855	0.89	-4.1
4,033,998	+		BPHYT_RS17855	0.89	-1.7
4,033,999	-		BPHYT_RS17855	0.89	-2.6
4,033,999	-		BPHYT_RS17855	0.89	-3.1
4,033,999	-		BPHYT_RS17855	0.89	-4.2
4,033,999	-		BPHYT_RS17855	0.89	-5.2
4,034,287	-				-4.9
4,034,287	-				-2.5
4,034,475	+				-1.0
4,034,475	+				-6.1
4,034,476	-				-2.0
4,034,576	-				-1.6
4,034,627	-				-1.2
4,034,627	-				+1.1
4,034,917	-		BPHYT_RS17860	0.13	+0.3
4,035,120	+		BPHYT_RS17860	0.42	-1.2
4,035,121	-		BPHYT_RS17860	0.42	-0.9
4,035,192	+		BPHYT_RS17860	0.52	+0.1
4,035,215	-		BPHYT_RS17860	0.56	+0.4
4,035,280	-		BPHYT_RS17860	0.65	-0.2
4,035,280	-		BPHYT_RS17860	0.65	-1.8
4,035,432	+		BPHYT_RS17860	0.86	-1.0
4,035,507	+				+0.2
4,035,507	+				-0.5
4,035,507	+				+1.0
4,035,507	+				-1.7
4,035,507	+				+0.5
4,035,507	+				-1.1
4,035,507	+				-1.3
4,035,507	+				+0.1
4,035,507	+				+0.3