Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17690

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,996,482	-				-0.6
3,996,482	-				-0.2
3,996,733	+		BPHYT_RS17685	0.34	-2.4
3,996,754	+		BPHYT_RS17685	0.36	-6.9
3,996,755	-		BPHYT_RS17685	0.37	-3.6
3,996,857	+		BPHYT_RS17685	0.50	-3.4
3,996,857	+		BPHYT_RS17685	0.50	-3.3
3,996,932	-		BPHYT_RS17685	0.60	-6.5
3,996,932	-		BPHYT_RS17685	0.60	-4.0
3,996,932	-		BPHYT_RS17685	0.60	-4.0
3,996,952	+		BPHYT_RS17685	0.63	-4.5
3,996,953	-		BPHYT_RS17685	0.63	-4.7
3,997,188	+				-5.6
3,997,188	+				-4.7
3,997,188	+				-1.9
3,997,189	-				-4.4
3,997,232	+				-3.8
3,997,232	+				-5.2
3,997,233	-				-3.6
3,997,233	-				-3.7
3,997,233	-				-5.0
3,997,233	-				-5.4
3,997,233	-				-2.7
3,997,334	-				+1.8
3,997,337	-				-0.8
3,997,337	-				-0.2
3,997,387	+				-0.4
3,997,387	+				-0.5
3,997,388	-				+0.4
3,997,410	+				-3.0
3,997,411	-				+0.5
3,997,411	-				+0.3
3,997,411	-				+1.1
3,997,548	+		BPHYT_RS17690	0.13	-7.2
3,997,583	+		BPHYT_RS17690	0.19	-4.7
3,997,583	+		BPHYT_RS17690	0.19	-3.9
3,997,583	+		BPHYT_RS17690	0.19	-6.2
3,997,583	+		BPHYT_RS17690	0.19	-3.6
3,997,628	+		BPHYT_RS17690	0.26	-2.9
3,997,628	+		BPHYT_RS17690	0.26	-4.0
3,997,628	+		BPHYT_RS17690	0.26	-7.1
3,997,628	+		BPHYT_RS17690	0.26	-4.7
3,997,629	-		BPHYT_RS17690	0.26	-3.1
3,997,629	-		BPHYT_RS17690	0.26	-1.2
3,997,629	-		BPHYT_RS17690	0.26	-4.6
3,997,631	+		BPHYT_RS17690	0.26	-5.9
3,997,632	-		BPHYT_RS17690	0.26	-2.1
3,997,646	+		BPHYT_RS17690	0.29	-5.0
3,998,112	-				-1.5
3,998,199	-		BPHYT_RS17695	0.16	-0.4
3,998,199	-		BPHYT_RS17695	0.16	-0.9
3,998,302	+		BPHYT_RS17695	0.33	-1.7
3,998,303	-		BPHYT_RS17695	0.33	+0.8
3,998,303	-		BPHYT_RS17695	0.33	-0.8
3,998,303	-		BPHYT_RS17695	0.33	+1.3
3,998,303	-		BPHYT_RS17695	0.33	+0.1
3,998,327	-		BPHYT_RS17695	0.37	-0.4
3,998,612	+		BPHYT_RS17695	0.82	-3.3
3,998,612	+		BPHYT_RS17695	0.82	-2.5
3,998,613	-		BPHYT_RS17695	0.83	-2.7
3,998,613	-		BPHYT_RS17695	0.83	-0.9
3,998,613	-		BPHYT_RS17695	0.83	-0.1
3,998,699	+				-5.7
3,998,700	-				-0.7
3,998,765	+				-4.1
3,998,779	+				-2.2
3,998,802	-				-0.6
3,998,802	-				-0.7