Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17660

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,993,533	-				-0.3
3,993,578	-				-0.3
3,993,578	-				+0.6
3,993,578	-				-0.2
3,993,578	-				-1.1
3,993,578	-				-1.2
3,993,580	-				+0.9
3,993,580	-				-0.2
3,993,580	-				-0.0
3,993,580	-				-0.5
3,993,580	-				-0.8
3,993,580	-				+0.6
3,993,656	-				+0.3
3,993,656	-				+1.8
3,993,656	-				+1.2
3,993,784	-		BPHYT_RS17660	0.15	-0.1
3,993,784	-		BPHYT_RS17660	0.15	-0.4
3,993,819	-		BPHYT_RS17660	0.25	-0.2
3,993,899	-		BPHYT_RS17660	0.47	+0.2
3,993,899	-		BPHYT_RS17660	0.47	-0.6
3,993,899	-		BPHYT_RS17660	0.47	+0.9
3,994,096	+				+0.5
3,994,097	-				-0.7
3,994,097	-				-2.1
3,994,111	-				+0.2
3,994,111	-				-0.6
3,994,111	-				+0.3
3,994,211	-				-0.9
3,994,215	+		BPHYT_RS17665	0.10	-0.2
3,994,216	-		BPHYT_RS17665	0.10	+1.1
3,994,216	-		BPHYT_RS17665	0.10	+0.0
3,994,216	-		BPHYT_RS17665	0.10	-0.4
3,994,221	+		BPHYT_RS17665	0.12	-0.1
3,994,222	-		BPHYT_RS17665	0.12	+0.1
3,994,238	-		BPHYT_RS17665	0.16	-3.1
3,994,238	-		BPHYT_RS17665	0.16	+0.0
3,994,238	-		BPHYT_RS17665	0.16	-2.0
3,994,240	+		BPHYT_RS17665	0.16	-1.7
3,994,240	+		BPHYT_RS17665	0.16	+2.4
3,994,240	+		BPHYT_RS17665	0.16	+0.3
3,994,240	+		BPHYT_RS17665	0.16	+1.6
3,994,241	-		BPHYT_RS17665	0.17	+0.2
3,994,245	+		BPHYT_RS17665	0.18	-0.9
3,994,245	+		BPHYT_RS17665	0.18	-0.1
3,994,375	-		BPHYT_RS17665	0.51	+0.8
3,994,403	+		BPHYT_RS17665	0.58	-0.5
3,994,403	+		BPHYT_RS17665	0.58	+0.5
3,994,404	-		BPHYT_RS17665	0.58	-0.2
3,994,404	-		BPHYT_RS17665	0.58	+1.0
3,994,404	-		BPHYT_RS17665	0.58	-0.6
3,994,407	+		BPHYT_RS17665	0.59	+0.3
3,994,408	-		BPHYT_RS17665	0.59	+0.4
3,994,408	-		BPHYT_RS17665	0.59	+0.3
3,994,408	-		BPHYT_RS17665	0.59	-2.2
3,994,408	-		BPHYT_RS17665	0.59	+0.0
3,994,464	+		BPHYT_RS17665	0.73	-1.3
3,994,464	+		BPHYT_RS17665	0.73	-1.1
3,994,464	+		BPHYT_RS17665	0.73	+0.7
3,994,473	+		BPHYT_RS17665	0.75	-1.9
3,994,492	+		BPHYT_RS17665	0.80	+0.2
3,994,549	-				+0.2
3,994,660	+				+0.8
3,994,948	+		BPHYT_RS17670	0.71	-3.6
3,994,949	-		BPHYT_RS17670	0.72	-4.6
3,994,949	-		BPHYT_RS17670	0.72	+0.3
3,994,949	-		BPHYT_RS17670	0.72	-4.2
3,995,009	+		BPHYT_RS17670	0.87	-1.8
3,995,009	+		BPHYT_RS17670	0.87	-4.3
3,995,064	+				-3.7
3,995,064	+				-5.7
3,995,064	+				-1.5
3,995,064	+				-1.4
3,995,064	+				-2.1
3,995,065	-				+1.6
3,995,065	-				-0.0
3,995,065	-				-1.1
3,995,065	-				+1.2