Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17630

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,987,913	+		BPHYT_RS17625	0.30	-3.1
3,987,914	-		BPHYT_RS17625	0.30	-0.1
3,987,914	-		BPHYT_RS17625	0.30	-2.8
3,987,965	+		BPHYT_RS17625	0.34	-1.4
3,987,965	+		BPHYT_RS17625	0.34	+0.7
3,987,966	-		BPHYT_RS17625	0.34	-4.4
3,988,052	+		BPHYT_RS17625	0.40	-4.7
3,988,053	-		BPHYT_RS17625	0.40	-1.9
3,988,136	+		BPHYT_RS17625	0.46	-0.3
3,988,137	-		BPHYT_RS17625	0.46	-1.2
3,988,139	+		BPHYT_RS17625	0.46	-2.8
3,988,139	+		BPHYT_RS17625	0.46	-1.7
3,988,140	-		BPHYT_RS17625	0.46	-1.1
3,988,334	+		BPHYT_RS17625	0.61	-2.4
3,988,335	-		BPHYT_RS17625	0.61	-0.2
3,988,532	+		BPHYT_RS17625	0.75	-2.2
3,988,551	+		BPHYT_RS17625	0.76	-2.4
3,988,551	+		BPHYT_RS17625	0.76	-1.1
3,988,551	+		BPHYT_RS17625	0.76	-1.1
3,988,551	+		BPHYT_RS17625	0.76	-4.2
3,988,551	+		BPHYT_RS17625	0.76	-1.8
3,988,551	+		BPHYT_RS17625	0.76	-0.7
3,988,552	-		BPHYT_RS17625	0.76	-4.1
3,988,552	-		BPHYT_RS17625	0.76	-0.3
3,988,552	-		BPHYT_RS17625	0.76	+0.3
3,988,552	-		BPHYT_RS17625	0.76	-1.5
3,988,552	-		BPHYT_RS17625	0.76	-2.7
3,988,599	+		BPHYT_RS17625	0.80	+0.0
3,988,599	+		BPHYT_RS17625	0.80	+0.5
3,988,599	+		BPHYT_RS17625	0.80	-1.7
3,988,599	+		BPHYT_RS17625	0.80	-2.0
3,988,599	+		BPHYT_RS17625	0.80	-2.0
3,988,600	-		BPHYT_RS17625	0.80	-2.4
3,988,600	-		BPHYT_RS17625	0.80	-2.0
3,988,602	-		BPHYT_RS17625	0.80	-1.7
3,988,640	+		BPHYT_RS17625	0.83	-3.8
3,988,640	+		BPHYT_RS17625	0.83	+1.1
3,988,640	+		BPHYT_RS17625	0.83	-1.7
3,988,641	-		BPHYT_RS17625	0.83	-2.3
3,988,641	-		BPHYT_RS17625	0.83	-0.1
3,988,679	+		BPHYT_RS17625	0.86	-0.1
3,988,680	-		BPHYT_RS17625	0.86	-1.8
3,988,698	+		BPHYT_RS17625	0.87	-3.2
3,988,778	+				-1.3
3,988,858	+				-2.7
3,988,858	+				-1.1
3,988,858	+				-1.3
3,988,879	+				-3.0
3,988,936	+				-0.9
3,988,936	+				+1.0
3,988,936	+				-1.9
3,988,936	+				-2.3
3,988,937	-				-2.7
3,988,937	-				-3.4
3,988,937	-				+0.1
3,988,937	-				-1.3
3,988,999	+		BPHYT_RS17630	0.19	-1.8
3,989,091	-		BPHYT_RS17630	0.34	-1.4
3,989,170	+		BPHYT_RS17630	0.47	+1.3
3,989,252	+		BPHYT_RS17630	0.60	-2.0
3,989,253	-		BPHYT_RS17630	0.60	-2.7
3,989,390	+		BPHYT_RS17630	0.82	-1.6
3,989,391	-		BPHYT_RS17630	0.83	-1.6
3,989,391	-		BPHYT_RS17630	0.83	-0.8
3,989,391	-		BPHYT_RS17630	0.83	-1.1
3,989,401	-		BPHYT_RS17630	0.84	-2.1
3,989,434	-		BPHYT_RS17630	0.90	-1.2
3,989,543	+				-2.1
3,989,578	+				-2.3
3,989,666	+				-1.4
3,989,667	-				+0.9
3,989,772	-				+0.5
3,989,929	+		BPHYT_RS17635	0.23	-0.9
3,989,930	-		BPHYT_RS17635	0.24	+0.7
3,989,930	-		BPHYT_RS17635	0.24	-0.3
3,990,027	+		BPHYT_RS17635	0.37	-1.3
3,990,392	+		BPHYT_RS17635	0.85	-0.4
3,990,393	-		BPHYT_RS17635	0.86	+0.8
3,990,436	+				+0.7
3,990,436	+				+0.1
3,990,436	+				+0.3