Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17490

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,961,276	+		BPHYT_RS17485	0.27	-0.0
3,961,276	+		BPHYT_RS17485	0.27	-0.2
3,961,277	-		BPHYT_RS17485	0.27	-1.1
3,961,277	-		BPHYT_RS17485	0.27	+1.3
3,961,279	+		BPHYT_RS17485	0.28	-0.3
3,961,280	-		BPHYT_RS17485	0.28	+0.4
3,961,303	+		BPHYT_RS17485	0.30	+0.6
3,961,303	+		BPHYT_RS17485	0.30	+0.1
3,961,303	+		BPHYT_RS17485	0.30	-0.4
3,961,452	+		BPHYT_RS17485	0.43	-0.0
3,961,590	-		BPHYT_RS17485	0.55	+0.1
3,961,646	+		BPHYT_RS17485	0.60	-3.0
3,961,690	-		BPHYT_RS17485	0.64	-1.3
3,962,088	+				-0.5
3,962,229	-		BPHYT_RS17490	0.19	+1.5
3,962,507	-		BPHYT_RS17490	0.63	+0.6
3,962,674	+				-0.8
3,962,674	+				-1.6
3,962,674	+				-0.4
3,962,674	+				+4.2
3,962,674	+				+3.1
3,962,675	-				+0.4
3,962,675	-				-0.3
3,962,675	-				-0.9
3,962,746	+				+1.4
3,962,746	+				-0.9
3,962,746	+				+0.3
3,962,747	-				+0.9
3,962,747	-				+0.1
3,962,853	-				-1.7
3,963,026	+		BPHYT_RS17495	0.14	+0.6
3,963,093	-		BPHYT_RS17495	0.18	+1.3
3,963,093	-		BPHYT_RS17495	0.18	+0.0
3,963,134	+		BPHYT_RS17495	0.20	-0.5
3,963,164	+		BPHYT_RS17495	0.22	-0.6
3,963,354	-		BPHYT_RS17495	0.32	+0.5