Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17430

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,948,028	+		BPHYT_RS17425	0.61	-2.7
3,948,029	-		BPHYT_RS17425	0.61	-1.0
3,948,262	+		BPHYT_RS17425	0.74	-1.3
3,948,416	+		BPHYT_RS17425	0.82	-0.6
3,948,457	+				-1.3
3,948,457	+		BPHYT_RS17425	0.85	+0.2
3,948,457	+		BPHYT_RS17425	0.85	-2.4
3,948,457	+		BPHYT_RS17425	0.85	+0.8
3,948,457	+		BPHYT_RS17425	0.85	-0.3
3,948,457	+		BPHYT_RS17425	0.85	+1.4
3,948,458	-		BPHYT_RS17425	0.85	+0.5
3,948,458	-		BPHYT_RS17425	0.85	-0.0
3,948,458	-		BPHYT_RS17425	0.85	+1.0
3,948,458	-		BPHYT_RS17425	0.85	-0.3
3,948,458	-		BPHYT_RS17425	0.85	-2.2
3,948,601	+				+0.3
3,948,601	+				+0.9
3,948,602	-				+0.8
3,948,602	-				-1.0
3,948,602	-				-0.9
3,948,602	-				-1.4
3,948,602	-				-1.4
3,948,602	-				-0.4
3,948,716	-				+0.3
3,949,106	+		BPHYT_RS17430	0.39	+0.7
3,949,107	-		BPHYT_RS17430	0.39	+7.8
3,949,107	-		BPHYT_RS17430	0.39	+0.5
3,949,331	+		BPHYT_RS17430	0.70	+1.1
3,949,332	-		BPHYT_RS17430	0.70	+0.4
3,949,383	-		BPHYT_RS17430	0.77	+0.2
3,949,641	+				-0.1
3,949,642	-				+0.1