Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17410

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,943,517	+		BPHYT_RS17400	0.88	-4.6
3,943,518	-		BPHYT_RS17400	0.88	-3.5
3,943,518	-		BPHYT_RS17400	0.88	-6.0
3,943,648	+				+0.7
3,943,661	-				-5.9
3,943,672	+				-0.5
3,943,672	+				-0.4
3,943,672	+				-0.0
3,943,672	+				-0.1
3,943,672	+				+0.1
3,943,673	-				-3.9
3,943,673	-				-7.7
3,943,673	-				-3.3
3,943,673	-				-1.0
3,943,673	-				-3.6
3,943,694	-				-5.3
3,943,985	+		BPHYT_RS17405	0.40	-3.9
3,944,492	-				-1.2
3,944,492	-				+2.1
3,944,618	+		BPHYT_RS17410	0.18	-1.0
3,944,622	+		BPHYT_RS17410	0.19	-1.9
3,944,623	-		BPHYT_RS17410	0.19	-0.7
3,945,067	+		BPHYT_RS17410	0.90	-0.4
3,945,067	+		BPHYT_RS17410	0.90	+0.3
3,945,112	-				-1.0
3,946,059	+				+1.5
3,946,059	+				-0.5