Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17390

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,939,567	-		BPHYT_RS17385	0.24	-0.2
3,939,567	-		BPHYT_RS17385	0.24	-0.0
3,939,665	+		BPHYT_RS17385	0.37	+0.1
3,939,665	+		BPHYT_RS17385	0.37	+0.4
3,939,665	+		BPHYT_RS17385	0.37	+1.1
3,939,677	+		BPHYT_RS17385	0.39	+0.1
3,939,678	-		BPHYT_RS17385	0.39	+1.4
3,939,710	+		BPHYT_RS17385	0.44	+1.1
3,939,710	+		BPHYT_RS17385	0.44	-0.3
3,939,830	+		BPHYT_RS17385	0.60	+0.6
3,940,013	+		BPHYT_RS17385	0.86	-0.3
3,940,014	-		BPHYT_RS17385	0.86	+1.1
3,940,030	+		BPHYT_RS17385	0.88	+0.5
3,940,030	+		BPHYT_RS17385	0.88	+1.0
3,940,032	+		BPHYT_RS17385	0.88	+0.5
3,940,033	-		BPHYT_RS17385	0.89	+0.3
3,940,033	-		BPHYT_RS17385	0.89	-0.3
3,940,054	+				-1.0
3,940,055	-				+0.7
3,940,055	-				+0.0
3,940,056	+				-0.6
3,940,057	-				-1.2
3,940,161	-				-1.4
3,940,161	-				-2.1
3,940,251	-				-3.8
3,940,398	+				+0.5
3,940,399	-				-1.0
3,940,471	-				-3.3
3,940,581	+				-2.9
3,940,583	+				-2.5
3,940,857	-		BPHYT_RS17390	0.25	-3.9
3,940,857	-		BPHYT_RS17390	0.25	-4.5
3,940,880	+		BPHYT_RS17390	0.27	-4.0
3,940,881	-		BPHYT_RS17390	0.27	-4.3
3,940,995	-		BPHYT_RS17390	0.34	-1.9
3,941,033	+		BPHYT_RS17390	0.37	-4.7
3,941,034	-		BPHYT_RS17390	0.37	-1.9
3,941,154	-		BPHYT_RS17390	0.45	-1.5
3,941,154	-		BPHYT_RS17390	0.45	-1.8
3,941,183	+		BPHYT_RS17390	0.47	-7.0
3,941,183	+		BPHYT_RS17390	0.47	-2.5
3,941,183	+		BPHYT_RS17390	0.47	-0.8
3,941,183	+		BPHYT_RS17390	0.47	-5.6
3,941,297	+		BPHYT_RS17390	0.54	-4.5
3,941,297	+		BPHYT_RS17390	0.54	-4.4
3,941,298	-		BPHYT_RS17390	0.54	-6.1
3,941,299	+		BPHYT_RS17390	0.55	-3.9
3,941,300	-		BPHYT_RS17390	0.55	-1.2
3,941,300	-		BPHYT_RS17390	0.55	-2.7
3,941,300	-		BPHYT_RS17390	0.55	-0.3
3,941,303	+		BPHYT_RS17390	0.55	-2.3
3,941,303	+		BPHYT_RS17390	0.55	-4.4
3,941,303	+		BPHYT_RS17390	0.55	-4.7
3,941,303	+		BPHYT_RS17390	0.55	-2.2
3,941,303	+		BPHYT_RS17390	0.55	-4.2
3,941,304	-		BPHYT_RS17390	0.55	+1.8
3,941,304	-		BPHYT_RS17390	0.55	-5.0
3,941,304	-		BPHYT_RS17390	0.55	-3.5
3,941,304	-		BPHYT_RS17390	0.55	-6.0
3,941,304	-		BPHYT_RS17390	0.55	-2.9
3,941,306	+		BPHYT_RS17390	0.55	-4.6
3,941,306	+		BPHYT_RS17390	0.55	-7.0
3,941,310	-		BPHYT_RS17390	0.55	-2.7
3,941,432	-		BPHYT_RS17390	0.63	-2.0
3,941,846	+				-3.1
3,941,847	-				-3.7
3,941,847	-				-5.1
3,942,013	-				-2.7
3,942,027	+				-5.8
3,942,027	+				-2.3
3,942,027	+				-4.0
3,942,028	-				-3.8
3,942,043	-				-4.8
3,942,075	+		BPHYT_RS17395	0.14	-5.7
3,942,619	+				-5.5