Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17380

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,937,798	-				-0.6
3,937,904	-		BPHYT_RS17370	0.48	+0.4
3,937,912	-		BPHYT_RS17370	0.53	-0.7
3,937,912	-		BPHYT_RS17370	0.53	-1.3
3,937,912	-		BPHYT_RS17370	0.53	-0.3
3,937,912	-		BPHYT_RS17370	0.53	+0.2
3,937,912	-		BPHYT_RS17370	0.53	-0.9
3,937,912	-		BPHYT_RS17370	0.53	-1.3
3,937,912	-		BPHYT_RS17370	0.53	-0.5
3,937,986	-				-1.9
3,938,056	+				+0.7
3,938,056	+				+0.7
3,938,127	+		BPHYT_RS17375	0.22	-0.8
3,938,127	+		BPHYT_RS17375	0.22	+0.5
3,938,128	-		BPHYT_RS17375	0.22	+1.5
3,938,179	-		BPHYT_RS17375	0.36	+0.6
3,938,314	+		BPHYT_RS17375	0.72	-0.8
3,938,332	-		BPHYT_RS17375	0.77	-1.6
3,938,332	-		BPHYT_RS17375	0.77	-0.2
3,938,379	+		BPHYT_RS17375	0.89	-0.3
3,938,379	+		BPHYT_RS17375	0.89	-3.3
3,938,380	-		BPHYT_RS17375	0.89	-0.3
3,938,380	-		BPHYT_RS17375	0.89	+0.2
3,938,380	-		BPHYT_RS17375	0.89	+1.5
3,938,380	-		BPHYT_RS17375	0.89	+1.1
3,938,580	-				+0.5
3,938,664	-				+0.8
3,938,823	+		BPHYT_RS17380	0.18	-4.8
3,938,823	+		BPHYT_RS17380	0.18	-6.6
3,938,823	+		BPHYT_RS17380	0.18	-2.7
3,938,823	+		BPHYT_RS17380	0.18	-5.5
3,938,824	-		BPHYT_RS17380	0.18	-4.8
3,938,824	-		BPHYT_RS17380	0.18	-2.0
3,938,824	-		BPHYT_RS17380	0.18	-4.6
3,939,078	+		BPHYT_RS17380	0.55	-3.1
3,939,078	+		BPHYT_RS17380	0.55	-3.7
3,939,198	+		BPHYT_RS17380	0.73	-3.4
3,939,198	+		BPHYT_RS17380	0.73	-4.3
3,939,198	+		BPHYT_RS17380	0.73	-3.0
3,939,199	-		BPHYT_RS17380	0.73	-1.8
3,939,199	-		BPHYT_RS17380	0.73	-1.8
3,939,199	-		BPHYT_RS17380	0.73	-2.6
3,939,199	-		BPHYT_RS17380	0.73	-4.8
3,939,381	+				-0.5
3,939,381	+				+0.6
3,939,567	-		BPHYT_RS17385	0.24	-0.2
3,939,567	-		BPHYT_RS17385	0.24	-0.0
3,939,665	+		BPHYT_RS17385	0.37	+0.1
3,939,665	+		BPHYT_RS17385	0.37	+0.4
3,939,665	+		BPHYT_RS17385	0.37	+1.1
3,939,677	+		BPHYT_RS17385	0.39	+0.1
3,939,678	-		BPHYT_RS17385	0.39	+1.4
3,939,710	+		BPHYT_RS17385	0.44	+1.1
3,939,710	+		BPHYT_RS17385	0.44	-0.3
3,939,830	+		BPHYT_RS17385	0.60	+0.6
3,940,013	+		BPHYT_RS17385	0.86	-0.3
3,940,014	-		BPHYT_RS17385	0.86	+1.1
3,940,030	+		BPHYT_RS17385	0.88	+0.5
3,940,030	+		BPHYT_RS17385	0.88	+1.0
3,940,032	+		BPHYT_RS17385	0.88	+0.5
3,940,033	-		BPHYT_RS17385	0.89	+0.3
3,940,033	-		BPHYT_RS17385	0.89	-0.3
3,940,054	+				-1.0
3,940,055	-				+0.7
3,940,055	-				+0.0
3,940,056	+				-0.6
3,940,057	-				-1.2
3,940,161	-				-1.4
3,940,161	-				-2.1
3,940,251	-				-3.8