Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17155

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,886,052	-		BPHYT_RS17150	0.25	+1.1
3,886,149	-		BPHYT_RS17150	0.33	-0.5
3,886,429	-		BPHYT_RS17150	0.56	-2.3
3,886,530	+		BPHYT_RS17150	0.64	+1.8
3,886,530	+		BPHYT_RS17150	0.64	-0.2
3,886,561	-		BPHYT_RS17150	0.67	-0.5
3,886,843	-		BPHYT_RS17150	0.90	+0.0
3,886,935	-				+0.4
3,886,935	-				-0.9
3,886,945	+				-0.3
3,886,946	-				+0.4
3,886,967	+				+0.1
3,886,967	+				+0.1
3,886,968	-				-1.6
3,886,992	-				-0.6
3,886,996	+				+0.2
3,887,005	+				+0.7
3,887,266	+		BPHYT_RS17155	0.27	-2.8
3,887,267	-		BPHYT_RS17155	0.27	+0.9
3,887,267	-		BPHYT_RS17155	0.27	-3.5
3,887,347	+		BPHYT_RS17155	0.36	-0.5
3,887,347	+		BPHYT_RS17155	0.36	-1.7
3,887,348	-		BPHYT_RS17155	0.36	-2.8
3,887,351	+		BPHYT_RS17155	0.36	-0.7
3,887,351	+		BPHYT_RS17155	0.36	-0.7
3,887,351	+		BPHYT_RS17155	0.36	-1.6
3,887,351	+		BPHYT_RS17155	0.36	-1.4
3,887,351	+		BPHYT_RS17155	0.36	-1.4
3,887,352	-		BPHYT_RS17155	0.36	-2.0
3,887,352	-		BPHYT_RS17155	0.36	-1.0
3,887,499	+		BPHYT_RS17155	0.52	-0.4
3,887,500	-		BPHYT_RS17155	0.52	-2.0
3,887,601	+		BPHYT_RS17155	0.63	+1.1
3,887,675	+		BPHYT_RS17155	0.71	-1.1
3,887,675	+		BPHYT_RS17155	0.71	-0.6
3,887,676	-		BPHYT_RS17155	0.72	-2.8
3,887,687	+		BPHYT_RS17155	0.73	-1.5
3,887,687	+		BPHYT_RS17155	0.73	-0.4
3,887,727	-		BPHYT_RS17155	0.77	-2.0
3,888,677	-				-0.5
3,888,690	+				-0.4
3,888,691	-				-1.3
3,888,753	+				+2.3
3,888,754	-				-1.5