Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17085

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,873,157	-				-0.3
3,873,164	-				+1.9
3,873,248	+				+0.9
3,873,249	-				-0.2
3,873,255	+				-2.5
3,873,283	+				+5.4
3,873,283	+				-0.4
3,873,283	+				+0.3
3,873,283	+				+0.1
3,873,283	+				-0.6
3,873,283	+				-0.2
3,873,284	-				-0.9
3,873,284	-				+0.6
3,873,284	-				+0.4
3,873,284	-				-1.6
3,873,287	+				+0.3
3,873,287	+				+0.3
3,873,287	+				-0.2
3,873,287	+				+0.6
3,873,287	+				-0.8
3,873,287	+				-0.5
3,873,287	+				+0.3
3,873,288	-				+0.3
3,873,342	+				-0.3
3,873,520	+		BPHYT_RS17085	0.38	+0.5
3,873,520	+		BPHYT_RS17085	0.38	+0.2
3,873,520	+		BPHYT_RS17085	0.38	+1.0
3,873,521	-		BPHYT_RS17085	0.38	-0.3
3,873,521	-		BPHYT_RS17085	0.38	-1.3
3,873,599	+		BPHYT_RS17085	0.52	+0.2
3,873,600	-		BPHYT_RS17085	0.52	-0.4
3,873,757	+		BPHYT_RS17085	0.80	+1.0
3,873,758	-		BPHYT_RS17085	0.81	-0.3
3,873,784	+		BPHYT_RS17085	0.85	+1.2
3,873,784	+		BPHYT_RS17085	0.85	+1.1
3,873,785	-		BPHYT_RS17085	0.86	-0.8
3,873,862	+				+0.1
3,874,027	+				-2.5
3,874,644	+				+0.6
3,874,644	+				+0.8
3,874,645	-				-0.7
3,874,645	-				-0.9