Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17065

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,869,473	-				+0.1
3,869,473	-				+0.2
3,869,491	-				-0.8
3,869,647	-				-1.6
3,869,680	-				-0.9
3,869,680	-				-0.9
3,869,682	-				+0.2
3,869,682	-				-0.2
3,869,711	-				+1.3
3,869,711	-				-0.9
3,870,422	+				-2.9
3,870,760	-				-1.3
3,870,787	-				-0.4
3,870,833	-				+0.6
3,870,833	-				+0.9
3,871,020	+		BPHYT_RS17075	0.26	-3.1
3,871,020	+		BPHYT_RS17075	0.26	-3.0
3,871,021	-		BPHYT_RS17075	0.26	-0.7
3,871,403	-		BPHYT_RS17075	0.67	-0.2
3,871,403	-		BPHYT_RS17075	0.67	-1.4