Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16990

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,852,214	-				-1.8
3,852,214	-				+1.8
3,852,214	-				-0.3
3,852,301	+				-1.2
3,852,301	+				-0.1
3,852,396	-				+0.2
3,852,485	+		BPHYT_RS16985	0.12	-0.9
3,852,485	+		BPHYT_RS16985	0.12	-0.8
3,852,485	+		BPHYT_RS16985	0.12	-1.2
3,852,531	+		BPHYT_RS16985	0.19	-0.6
3,852,532	-		BPHYT_RS16985	0.19	+0.3
3,852,532	-		BPHYT_RS16985	0.19	-0.3
3,852,605	+		BPHYT_RS16985	0.32	-0.2
3,852,608	+		BPHYT_RS16985	0.32	+0.1
3,852,806	+		BPHYT_RS16985	0.65	-0.3
3,852,807	-		BPHYT_RS16985	0.65	-0.6
3,853,008	-				-0.3
3,853,008	-				-1.8
3,853,008	-				-0.4
3,853,242	+		BPHYT_RS16990	0.16	-2.1
3,853,417	+		BPHYT_RS16990	0.29	-2.3
3,853,417	+		BPHYT_RS16990	0.29	-2.0
3,853,418	-		BPHYT_RS16990	0.29	-1.0
3,853,612	+		BPHYT_RS16990	0.43	-1.6
3,853,613	-		BPHYT_RS16990	0.43	-0.5
3,854,143	+		BPHYT_RS16990	0.81	-2.4
3,854,143	+		BPHYT_RS16990	0.81	-0.2
3,854,144	-		BPHYT_RS16990	0.81	-2.3
3,854,408	+				-2.1
3,854,408	+				-2.0
3,854,409	-				-0.6
3,854,409	-				+0.2
3,854,409	-				-0.4
3,854,409	-				+0.0
3,854,451	+				-1.7
3,854,451	+				-1.8
3,854,454	+				-2.2
3,854,454	+				-1.0
3,854,573	+				-1.4
3,854,573	+				-3.7
3,854,573	+				-1.5
3,854,573	+				-2.3
3,854,574	-				-0.2
3,854,579	-				+0.0
3,854,672	+				-0.6
3,854,673	-				-1.2
3,854,675	+				-0.2
3,854,676	-				-0.1
3,854,778	-		BPHYT_RS16995	0.14	-2.6
3,854,882	+		BPHYT_RS16995	0.30	-1.9
3,854,883	-		BPHYT_RS16995	0.30	-0.7
3,854,883	-		BPHYT_RS16995	0.30	-1.6
3,854,981	+		BPHYT_RS16995	0.45	+0.4
3,854,981	+		BPHYT_RS16995	0.45	-0.1
3,855,074	+		BPHYT_RS16995	0.59	+2.0
3,855,075	-		BPHYT_RS16995	0.59	+0.3
3,855,075	-		BPHYT_RS16995	0.59	-2.8
3,855,099	-		BPHYT_RS16995	0.63	-1.6
3,855,099	-		BPHYT_RS16995	0.63	-1.2
3,855,138	-		BPHYT_RS16995	0.69	-1.1
3,855,218	+		BPHYT_RS16995	0.81	-1.3
3,855,328	+				-0.1
3,855,329	-				-2.3
3,855,329	-				-2.6
3,855,329	-				-2.7
3,855,339	-				+2.3
3,855,339	-				-2.3
3,855,339	-				-2.1
3,855,356	+				-3.7
3,855,357	-				-1.0