Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16980

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,849,130	+				-0.8
3,849,220	+				-0.2
3,849,220	+				-0.4
3,849,221	-				+0.5
3,849,427	+		BPHYT_RS16975	0.23	-1.9
3,849,428	-		BPHYT_RS16975	0.23	-1.8
3,849,428	-		BPHYT_RS16975	0.23	-2.0
3,849,645	-		BPHYT_RS16975	0.48	-2.4
3,849,795	-		BPHYT_RS16975	0.65	-0.4
3,849,818	+		BPHYT_RS16975	0.68	-3.8
3,849,818	+		BPHYT_RS16975	0.68	-0.5
3,849,818	+		BPHYT_RS16975	0.68	-0.2
3,849,819	-		BPHYT_RS16975	0.68	-1.6
3,849,819	-		BPHYT_RS16975	0.68	-1.8
3,851,674	-		BPHYT_RS16980	0.75	+0.8
3,852,214	-				-1.8
3,852,214	-				+1.8
3,852,214	-				-0.3
3,852,301	+				-1.2
3,852,301	+				-0.1
3,852,396	-				+0.2
3,852,485	+		BPHYT_RS16985	0.12	-0.9
3,852,485	+		BPHYT_RS16985	0.12	-0.8
3,852,485	+		BPHYT_RS16985	0.12	-1.2
3,852,531	+		BPHYT_RS16985	0.19	-0.6
3,852,532	-		BPHYT_RS16985	0.19	+0.3
3,852,532	-		BPHYT_RS16985	0.19	-0.3
3,852,605	+		BPHYT_RS16985	0.32	-0.2
3,852,608	+		BPHYT_RS16985	0.32	+0.1
3,852,806	+		BPHYT_RS16985	0.65	-0.3
3,852,807	-		BPHYT_RS16985	0.65	-0.6
3,853,008	-				-0.3
3,853,008	-				-1.8
3,853,008	-				-0.4