Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16955

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,843,301	-		BPHYT_RS16950	0.24	-0.6
3,843,301	-		BPHYT_RS16950	0.24	+0.2
3,843,301	-		BPHYT_RS16950	0.24	-0.2
3,843,492	-		BPHYT_RS16950	0.42	-1.6
3,843,512	-		BPHYT_RS16950	0.44	+0.1
3,844,214	+		BPHYT_RS16955	0.12	+0.7
3,844,214	+		BPHYT_RS16955	0.12	-0.9
3,844,214	+				+0.8
3,844,214	+		BPHYT_RS16955	0.12	-1.0
3,844,215	-		BPHYT_RS16955	0.12	+0.5
3,844,215	-		BPHYT_RS16955	0.12	+0.8
3,844,215	-		BPHYT_RS16955	0.12	+0.3
3,844,215	-		BPHYT_RS16955	0.12	-0.4
3,844,340	+		BPHYT_RS16955	0.25	-1.4
3,844,340	+		BPHYT_RS16955	0.25	+0.4
3,844,562	+		BPHYT_RS16955	0.47	+3.6
3,844,562	+		BPHYT_RS16955	0.47	+0.2
3,844,562	+				-0.5
3,844,562	+		BPHYT_RS16955	0.47	-1.7
3,844,563	-		BPHYT_RS16955	0.47	+0.2
3,844,563	-		BPHYT_RS16955	0.47	+0.3
3,844,563	-		BPHYT_RS16955	0.47	-0.9
3,844,759	+		BPHYT_RS16955	0.67	-1.3
3,845,070	+				-0.5
3,845,071	-				-0.7
3,845,196	-				+0.2
3,845,196	-				+0.9
3,845,304	-				+0.2
3,845,348	+				+1.6
3,845,348	+				-0.5
3,845,418	+				+1.0
3,845,487	+				+0.8
3,845,521	+				-0.4
3,845,606	+				+0.9
3,845,606	+				+0.2
3,845,606	+				-0.4
3,845,606	+				-0.4
3,845,795	-				-0.5
3,845,854	+				-0.8
3,845,854	+				+0.4
3,845,855	-				+0.6
3,845,897	+				-0.3
3,845,904	+				-1.1
3,845,988	-				+0.8
3,845,988	-				-1.0
3,846,031	+				+0.6
3,846,073	+				+0.4
3,846,073	+				+0.6
3,846,074	-				+0.2