Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16935 and BPHYT_RS16940 are separated by 130 nucleotides BPHYT_RS16940 and BPHYT_RS16945 overlap by 4 nucleotides BPHYT_RS16945 and BPHYT_RS16950 are separated by 36 nucleotides
BPHYT_RS16935: BPHYT_RS16935 - D-galactose ABC transporter, substrate-binding component <small>(from data)</small>, at 3,840,428 to 3,841,426
_RS16935
BPHYT_RS16940: BPHYT_RS16940 - short-chain dehydrogenase, at 3,841,557 to 3,842,333
_RS16940
BPHYT_RS16945: BPHYT_RS16945 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 3,842,330 to 3,843,010
_RS16945
BPHYT_RS16950: BPHYT_RS16950 - 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) <small>(from data)</small>, at 3,843,047 to 3,844,099
_RS16950
Position (kb) 3842
3843
3844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3841.444 kb on + strand at 3841.445 kb on - strand at 3841.445 kb on - strand at 3841.445 kb on - strand at 3841.520 kb on + strand at 3841.771 kb on + strand, within BPHYT_RS16940 at 3841.772 kb on - strand, within BPHYT_RS16940 at 3841.813 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.074 kb on - strand, within BPHYT_RS16940 at 3842.373 kb on + strand at 3842.374 kb on - strand at 3842.419 kb on + strand, within BPHYT_RS16945 at 3842.421 kb on + strand, within BPHYT_RS16945 at 3842.421 kb on + strand, within BPHYT_RS16945 at 3842.422 kb on - strand, within BPHYT_RS16945 at 3842.422 kb on - strand at 3842.492 kb on - strand, within BPHYT_RS16945 at 3842.979 kb on + strand at 3842.979 kb on + strand at 3842.980 kb on - strand at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.492 kb on - strand, within BPHYT_RS16950 at 3843.512 kb on - strand, within BPHYT_RS16950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 3,841,444 + +0.5 3,841,445 - -1.5 3,841,445 - +0.0 3,841,445 - +1.1 3,841,520 + -0.8 3,841,771 + BPHYT_RS16940 0.28 -0.1 3,841,772 - BPHYT_RS16940 0.28 -0.1 3,841,813 + BPHYT_RS16940 0.33 +0.8 3,842,073 + BPHYT_RS16940 0.66 +0.5 3,842,073 + BPHYT_RS16940 0.66 +0.3 3,842,073 + BPHYT_RS16940 0.66 +0.0 3,842,073 + BPHYT_RS16940 0.66 +1.5 3,842,074 - BPHYT_RS16940 0.67 -0.5 3,842,373 + -3.3 3,842,374 - +2.3 3,842,419 + BPHYT_RS16945 0.13 -2.6 3,842,421 + BPHYT_RS16945 0.13 -2.1 3,842,421 + BPHYT_RS16945 0.13 -3.1 3,842,422 - BPHYT_RS16945 0.14 -2.8 3,842,422 - +0.3 3,842,492 - BPHYT_RS16945 0.24 -3.1 3,842,979 + -1.8 3,842,979 + -1.5 3,842,980 - -1.1 3,843,301 - BPHYT_RS16950 0.24 -0.6 3,843,301 - BPHYT_RS16950 0.24 +0.2 3,843,301 - BPHYT_RS16950 0.24 -0.2 3,843,492 - BPHYT_RS16950 0.42 -1.6 3,843,512 - BPHYT_RS16950 0.44 +0.1
Or see this region's nucleotide sequence