Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16760

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,803,553	-				+3.7
3,803,648	+				+0.9
3,803,648	+				-1.4
3,803,844	+		BPHYT_RS16755	0.38	-0.1
3,803,844	+		BPHYT_RS16755	0.38	-0.3
3,803,844	+		BPHYT_RS16755	0.38	-2.1
3,803,844	+		BPHYT_RS16755	0.38	+1.5
3,803,844	+		BPHYT_RS16755	0.38	-2.4
3,803,845	-		BPHYT_RS16755	0.38	+0.2
3,803,845	-		BPHYT_RS16755	0.38	-0.2
3,803,963	+		BPHYT_RS16755	0.65	-1.6
3,804,024	+		BPHYT_RS16755	0.79	-0.8
3,804,115	-				-1.1
3,804,128	+				+0.1
3,804,128	+				+0.3
3,804,164	-				+0.8
3,804,439	-				+0.1
3,804,439	-				+0.0
3,804,439	-				-0.1
3,804,522	+				+0.6
3,804,526	+				+0.3
3,804,526	+				-0.1
3,804,527	-				-1.6
3,804,527	-				-1.0
3,804,828	+		BPHYT_RS16760	0.67	-0.2
3,804,829	-		BPHYT_RS16760	0.67	-1.6
3,804,830	+		BPHYT_RS16760	0.67	+4.5
3,805,135	-				+1.6
3,805,223	+				+1.2
3,805,257	-				+0.1
3,805,258	+				+0.1
3,805,258	+				-2.4
3,805,259	-				-0.3
3,805,259	-				+0.8
3,805,275	+				+0.4
3,805,321	-				+0.2
3,805,361	-				+0.4