Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16735

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,787,581	+				-0.3
3,787,582	-				+0.1
3,787,652	-				+0.5
3,787,714	+				-0.8
3,787,715	-				-1.0
3,787,715	-				+0.2
3,788,355	-				-0.5
3,788,355	-				+3.3
3,788,382	-				+0.4
3,788,515	+				-1.9
3,788,515	+				+0.8
3,789,135	-		BPHYT_RS16735	0.40	+1.2
3,789,267	-		BPHYT_RS16735	0.47	-0.3
3,789,452	+		BPHYT_RS16735	0.56	+2.0
3,789,466	+		BPHYT_RS16735	0.57	+1.2
3,789,466	+		BPHYT_RS16735	0.57	+1.2
3,789,467	-		BPHYT_RS16735	0.57	+0.9
3,789,525	+		BPHYT_RS16735	0.60	+1.4
3,789,605	+		BPHYT_RS16735	0.64	+0.2
3,789,605	+		BPHYT_RS16735	0.64	+7.2
3,789,633	-		BPHYT_RS16735	0.66	+0.5
3,789,633	-		BPHYT_RS16735	0.66	+0.6
3,790,056	-		BPHYT_RS16735	0.88	-0.3
3,790,208	+				+1.6
3,790,209	-				-0.2
3,790,209	-				+0.3
3,790,541	-				+1.9
3,790,542	+				-0.2
3,790,543	-				+1.3
3,790,544	+				+0.1
3,790,565	+				-1.0
3,790,566	-				-0.5
3,790,647	+				-3.9
3,790,647	+				-0.8
3,790,647	+				-3.3
3,790,648	-				-0.5
3,790,780	+		BPHYT_RS16740	0.24	+1.2
3,790,780	+		BPHYT_RS16740	0.24	-0.7
3,790,822	-		BPHYT_RS16740	0.28	-0.8
3,790,951	+		BPHYT_RS16740	0.44	-1.7
3,790,977	+		BPHYT_RS16740	0.47	-1.4
3,790,977	+		BPHYT_RS16740	0.47	+0.5
3,790,978	-		BPHYT_RS16740	0.47	-2.0
3,791,069	+		BPHYT_RS16740	0.58	-1.5
3,791,069	+		BPHYT_RS16740	0.58	-0.5
3,791,073	+		BPHYT_RS16740	0.58	-1.8
3,791,074	-		BPHYT_RS16740	0.58	+3.9
3,791,074	-		BPHYT_RS16740	0.58	-1.8