Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16510

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,742,505	-		BPHYT_RS16505	0.63	-0.8
3,742,505	-		BPHYT_RS16505	0.63	-0.1
3,742,645	+		BPHYT_RS16505	0.83	-1.1
3,742,692	+				+0.9
3,742,693	-				-0.1
3,742,693	-				+0.3
3,742,756	+				-0.8
3,742,848	+				-0.5
3,742,914	+				-0.3
3,743,161	-		BPHYT_RS16510	0.22	-0.2
3,743,867	-				-0.6
3,743,867	-				-3.0
3,743,867	-				-0.5
3,743,867	-				-0.7
3,743,963	+				+0.5
3,744,015	+				+0.2
3,744,085	+				+0.3
3,744,085	+				+0.3
3,744,086	-				-0.7
3,744,086	-				+0.4
3,744,086	-				-0.5
3,744,118	+				-2.0
3,744,296	+		BPHYT_RS16515	0.18	+1.0
3,744,515	-		BPHYT_RS16515	0.49	-1.6