Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16465

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,732,272	+		BPHYT_RS16460	0.53	-0.0
3,732,273	-		BPHYT_RS16460	0.53	-1.7
3,732,273	-		BPHYT_RS16460	0.53	-0.4
3,732,273	-		BPHYT_RS16460	0.53	+0.5
3,732,273	-		BPHYT_RS16460	0.53	+0.4
3,732,273	-		BPHYT_RS16460	0.53	-0.9
3,732,273	-		BPHYT_RS16460	0.53	-0.9
3,732,273	-		BPHYT_RS16460	0.53	+0.2
3,732,276	-		BPHYT_RS16460	0.53	-0.4
3,732,387	+		BPHYT_RS16460	0.61	+1.2
3,732,429	-		BPHYT_RS16460	0.64	+0.2
3,732,432	-		BPHYT_RS16460	0.64	-1.6
3,732,432	-		BPHYT_RS16460	0.64	+0.0
3,732,450	+		BPHYT_RS16460	0.66	+2.5
3,732,561	-		BPHYT_RS16460	0.74	+0.4
3,732,650	+		BPHYT_RS16460	0.80	-2.1
3,732,651	-		BPHYT_RS16460	0.80	-0.7
3,732,651	-		BPHYT_RS16460	0.80	+1.0
3,732,785	+				+0.1
3,732,786	-				+0.2
3,732,786	-				-0.6
3,732,786	-				+0.2
3,732,786	-				-0.4
3,733,099	+				-1.0
3,733,099	+				-1.6
3,733,100	-				+0.8
3,733,100	-				-0.5
3,733,112	-				-0.7
3,733,159	+				-0.9
3,733,160	-				+0.5
3,733,220	+				+0.1
3,733,222	+				+0.0
3,733,222	+				+0.1
3,733,222	+				-0.8
3,733,222	+				-1.5
3,733,222	+				-0.2
3,733,223	-				-1.3
3,733,223	-				+0.1
3,733,223	-				-0.5
3,733,436	-		BPHYT_RS16465	0.20	+0.4
3,733,476	-		BPHYT_RS16465	0.22	-0.6
3,733,621	+		BPHYT_RS16465	0.31	-1.2
3,733,621	+		BPHYT_RS16465	0.31	-0.7
3,733,621	+		BPHYT_RS16465	0.31	+1.0
3,733,621	+		BPHYT_RS16465	0.31	-0.7
3,733,621	+		BPHYT_RS16465	0.31	-0.5
3,733,621	+		BPHYT_RS16465	0.31	+0.1
3,733,621	+		BPHYT_RS16465	0.31	-0.7
3,733,622	-		BPHYT_RS16465	0.31	-0.3
3,733,622	-		BPHYT_RS16465	0.31	-0.6
3,733,675	+		BPHYT_RS16465	0.34	-0.5
3,733,675	+		BPHYT_RS16465	0.34	-1.6
3,733,675	+		BPHYT_RS16465	0.34	-1.8
3,733,676	-		BPHYT_RS16465	0.35	-1.0
3,733,676	-		BPHYT_RS16465	0.35	-2.0
3,733,676	-		BPHYT_RS16465	0.35	-0.0
3,733,676	-		BPHYT_RS16465	0.35	-0.4
3,733,676	-		BPHYT_RS16465	0.35	-0.2
3,733,676	-		BPHYT_RS16465	0.35	-0.1
3,733,676	-		BPHYT_RS16465	0.35	-0.4
3,733,676	-		BPHYT_RS16465	0.35	+0.1
3,733,676	-		BPHYT_RS16465	0.35	+0.5
3,733,676	-		BPHYT_RS16465	0.35	-0.4
3,733,759	+		BPHYT_RS16465	0.40	-2.0
3,733,760	-		BPHYT_RS16465	0.40	-1.2
3,733,979	-		BPHYT_RS16465	0.53	+0.2
3,734,105	-		BPHYT_RS16465	0.61	+0.9
3,734,105	-		BPHYT_RS16465	0.61	-0.8
3,734,261	+		BPHYT_RS16465	0.70	-2.0
3,734,261	+		BPHYT_RS16465	0.70	-0.7
3,734,261	+		BPHYT_RS16465	0.70	+0.4
3,734,262	-		BPHYT_RS16465	0.70	-1.4
3,734,262	-		BPHYT_RS16465	0.70	-0.7
3,734,264	-		BPHYT_RS16465	0.70	-0.2
3,734,264	-		BPHYT_RS16465	0.70	-0.2
3,734,446	+		BPHYT_RS16465	0.82	+0.4
3,734,461	+		BPHYT_RS16465	0.82	-0.2
3,734,461	+		BPHYT_RS16465	0.82	-0.6
3,734,930	+				+0.7
3,734,953	+				+0.1
3,734,953	+				-0.3
3,734,958	+				+0.8
3,734,958	+				-0.3
3,734,958	+				+0.3
3,734,958	+				+0.6
3,734,958	+				+0.6
3,734,958	+				+1.3
3,734,958	+				+0.2
3,734,959	-				+0.3
3,734,959	-				-0.0
3,734,959	-				-0.2
3,734,959	-				-0.9
3,734,959	-				-0.4
3,735,001	+				-1.9
3,735,002	-				+0.4
3,735,002	-				+0.8
3,735,002	-				-1.8
3,735,006	+				-0.1
3,735,007	-				+1.7
3,735,007	-				+2.3
3,735,317	+		BPHYT_RS16470	0.28	+2.4
3,735,317	+		BPHYT_RS16470	0.28	+2.8
3,735,317	+		BPHYT_RS16470	0.28	+2.3
3,735,318	-		BPHYT_RS16470	0.28	+3.1
3,735,320	-		BPHYT_RS16470	0.28	+1.3
3,735,568	+		BPHYT_RS16470	0.60	+2.7
3,735,568	+		BPHYT_RS16470	0.60	+2.6
3,735,569	-		BPHYT_RS16470	0.60	+1.0