Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16325

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,703,564	+				+1.0
3,703,703	-				+1.0
3,703,703	-				-0.4
3,703,727	+				+0.5
3,703,727	+				-0.5
3,703,868	+				+0.5
3,703,868	+				-0.2
3,703,868	+				+0.5
3,703,868	+				+0.7
3,703,869	-				+1.1
3,703,873	+				-1.3
3,703,874	-				+0.3
3,703,885	+				+2.4
3,703,940	+				-2.8
3,703,940	+				-1.2
3,703,940	+				-3.4
3,704,277	+		BPHYT_RS16320	0.79	-0.7
3,704,278	-		BPHYT_RS16320	0.79	-3.1
3,704,278	-		BPHYT_RS16320	0.79	-1.8
3,704,278	-		BPHYT_RS16320	0.79	-3.8
3,704,408	+				+0.5
3,704,467	+				+1.5
3,704,468	-				+0.6
3,704,593	-				-0.5
3,706,294	+				-1.7
3,706,354	-				+0.5
3,706,842	-		BPHYT_RS16330	0.68	-0.2
3,706,865	+		BPHYT_RS16330	0.72	+0.1
3,707,012	+				-0.2
3,707,022	-				-0.9
3,707,022	-				+0.5
3,707,091	+				-0.7
3,707,091	+				-0.2
3,707,092	-				-0.0
3,707,092	-				+0.0
3,707,092	-				+2.3
3,707,153	-				+1.9
3,707,153	-				+0.5