Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16085

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,649,693	+		BPHYT_RS16080	0.39	-1.1
3,649,693	+		BPHYT_RS16080	0.39	-1.5
3,649,694	-		BPHYT_RS16080	0.39	-2.7
3,649,694	-		BPHYT_RS16080	0.39	-2.2
3,649,694	-		BPHYT_RS16080	0.39	-1.3
3,650,650	-				-0.3
3,650,733	-				-2.6
3,650,735	+				-1.3
3,650,735	+				-1.9
3,650,736	-				-1.7
3,650,941	+		BPHYT_RS16085	0.27	-3.5
3,651,150	-		BPHYT_RS16085	0.49	-2.0
3,651,150	-		BPHYT_RS16085	0.49	-2.7
3,651,361	+		BPHYT_RS16085	0.72	-3.7
3,651,656	-				-0.6
3,651,766	+		BPHYT_RS16090	0.38	-3.1
3,651,767	-		BPHYT_RS16090	0.38	-1.1
3,651,941	-				-0.6
3,652,034	+				+0.2
3,652,116	-				+0.3
3,652,116	-				+0.5
3,652,116	-				-0.5
3,652,183	+		BPHYT_RS16095	0.16	-0.8
3,652,553	-		BPHYT_RS16095	0.49	+0.6