Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16075

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,646,578	-		BPHYT_RS16070	0.42	-0.5
3,646,578	-		BPHYT_RS16070	0.42	-1.0
3,646,973	+		BPHYT_RS16070	0.83	-0.5
3,646,973	+		BPHYT_RS16070	0.83	-2.2
3,646,973	+		BPHYT_RS16070	0.83	+0.2
3,646,974	-		BPHYT_RS16070	0.83	-0.9
3,647,036	+		BPHYT_RS16070	0.89	+0.4
3,647,065	-				-0.7
3,647,090	-				+1.5
3,647,090	-				-0.4
3,647,179	+				+4.2
3,647,194	-				+1.0
3,647,195	+				-0.3
3,647,204	+				-1.5
3,647,221	-				+0.3
3,647,489	+				-0.8
3,647,613	+				-1.5
3,647,614	-				-1.8
3,647,733	+		BPHYT_RS16075	0.15	-2.2
3,647,735	+		BPHYT_RS16075	0.15	-3.4
3,647,735	+		BPHYT_RS16075	0.15	-2.1
3,647,736	-		BPHYT_RS16075	0.15	-2.5
3,647,895	+		BPHYT_RS16075	0.26	-5.1
3,647,973	+		BPHYT_RS16075	0.32	-3.3
3,647,973	+		BPHYT_RS16075	0.32	-1.9
3,647,973	+		BPHYT_RS16075	0.32	+0.8
3,647,974	-		BPHYT_RS16075	0.32	-4.1
3,648,352	-		BPHYT_RS16075	0.58	-2.8
3,648,389	+		BPHYT_RS16075	0.61	-3.3
3,648,429	+		BPHYT_RS16075	0.64	-1.2
3,648,429	+		BPHYT_RS16075	0.64	-0.5
3,648,430	-		BPHYT_RS16075	0.64	-2.8
3,648,431	+		BPHYT_RS16075	0.64	-3.2
3,648,480	+		BPHYT_RS16075	0.68	-1.8
3,648,573	+		BPHYT_RS16075	0.74	-0.6
3,648,573	+		BPHYT_RS16075	0.74	-1.2
3,648,574	-		BPHYT_RS16075	0.74	-3.1
3,648,574	-		BPHYT_RS16075	0.74	-3.6
3,648,575	+		BPHYT_RS16075	0.74	+0.0
3,648,749	+		BPHYT_RS16075	0.87	-1.9
3,648,749	+		BPHYT_RS16075	0.87	-1.6
3,648,749	+		BPHYT_RS16075	0.87	-1.1
3,648,750	-		BPHYT_RS16075	0.87	-2.0
3,648,750	-		BPHYT_RS16075	0.87	-2.4
3,648,750	-		BPHYT_RS16075	0.87	-2.1
3,648,750	-		BPHYT_RS16075	0.87	-2.2
3,648,754	-		BPHYT_RS16075	0.87	-2.9
3,648,754	-		BPHYT_RS16075	0.87	-3.7
3,648,910	+				-0.7
3,648,910	+				+0.2
3,648,911	-				-1.3
3,649,039	+				+0.3
3,649,040	-				+0.0
3,649,040	-				-0.8
3,649,113	-				-1.5
3,649,113	-				-2.3
3,649,113	-				-1.7
3,649,262	-		BPHYT_RS16080	0.10	-1.9
3,649,409	-		BPHYT_RS16080	0.20	-3.1
3,649,505	-		BPHYT_RS16080	0.27	-2.6
3,649,577	+		BPHYT_RS16080	0.32	-1.3
3,649,693	+		BPHYT_RS16080	0.39	-1.1
3,649,693	+		BPHYT_RS16080	0.39	-1.5
3,649,694	-		BPHYT_RS16080	0.39	-2.7
3,649,694	-		BPHYT_RS16080	0.39	-2.2
3,649,694	-		BPHYT_RS16080	0.39	-1.3