Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16050

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,640,439	+		BPHYT_RS16045	0.42	-1.9
3,640,439	+		BPHYT_RS16045	0.42	-0.5
3,640,513	-		BPHYT_RS16045	0.47	-0.9
3,640,515	-		BPHYT_RS16045	0.47	-0.7
3,640,870	-		BPHYT_RS16045	0.70	-1.7
3,640,925	+		BPHYT_RS16045	0.73	-0.2
3,640,926	-		BPHYT_RS16045	0.74	-0.1
3,640,928	+		BPHYT_RS16045	0.74	-0.8
3,640,959	-		BPHYT_RS16045	0.76	-0.4
3,641,237	+				-1.8
3,641,334	+				-1.2
3,641,335	-				-0.6
3,641,348	-				+0.8
3,641,491	+		BPHYT_RS16050	0.10	-1.5
3,641,703	+		BPHYT_RS16050	0.29	-2.1
3,641,704	-		BPHYT_RS16050	0.29	+0.2
3,642,045	+		BPHYT_RS16050	0.60	-0.6
3,642,045	+		BPHYT_RS16050	0.60	-0.9
3,642,937	+		BPHYT_RS16055	0.42	-1.2
3,642,938	-		BPHYT_RS16055	0.42	+0.1
3,642,938	-		BPHYT_RS16055	0.42	+3.5
3,643,161	-		BPHYT_RS16055	0.64	-1.0