Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16030

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,635,035	+		BPHYT_RS16020	0.66	-0.2
3,635,049	+		BPHYT_RS16020	0.68	+3.9
3,635,343	-				-0.1
3,635,517	+		BPHYT_RS16025	0.27	-0.4
3,635,517	+		BPHYT_RS16025	0.27	+2.8
3,635,518	-		BPHYT_RS16025	0.27	+0.5
3,635,663	-		BPHYT_RS16025	0.50	-1.1
3,635,673	+		BPHYT_RS16025	0.52	+0.5
3,636,112	-				-1.0
3,636,410	-		BPHYT_RS16030	0.32	+1.8
3,636,449	-		BPHYT_RS16030	0.35	+0.1
3,636,686	-		BPHYT_RS16030	0.54	+2.0
3,636,687	+		BPHYT_RS16030	0.54	+0.1
3,636,687	+		BPHYT_RS16030	0.54	+0.0
3,636,688	-		BPHYT_RS16030	0.54	+0.9
3,636,688	-		BPHYT_RS16030	0.54	+0.8
3,636,692	-		BPHYT_RS16030	0.55	+1.3
3,636,735	+		BPHYT_RS16030	0.58	+0.7
3,636,735	+		BPHYT_RS16030	0.58	+0.9
3,637,172	+				-0.7
3,638,104	+		BPHYT_RS16035	0.89	+1.2
3,638,134	+				+0.0